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Patch modules to fix nf-core#1103
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9 files changed

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-13
lines changed

9 files changed

+118
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modules.json

+8-4
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@@ -28,12 +28,14 @@
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"fastp": {
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"branch": "master",
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"git_sha": "d497a4868ace3302016ea8ed4b395072d5e833cd",
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"installed_by": ["fastq_fastqc_umitools_fastp", "modules"]
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"installed_by": ["fastq_fastqc_umitools_fastp", "modules"],
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"patch": "modules/nf-core/fastp/fastp.diff"
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},
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"fastqc": {
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"branch": "master",
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"git_sha": "102cc9b709a6da9f7cee2373563ab1464fca9c0a",
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"installed_by": ["fastq_fastqc_umitools_trimgalore", "fastq_fastqc_umitools_fastp"]
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"installed_by": ["fastq_fastqc_umitools_trimgalore", "fastq_fastqc_umitools_fastp"],
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"patch": "modules/nf-core/fastqc/fastqc.diff"
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},
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"fq/subsample": {
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"branch": "master",
@@ -222,12 +224,14 @@
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"umitools/dedup": {
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"branch": "master",
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"git_sha": "7297204bf49273300a3dbfa4b7a4027c8683f1bd",
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"installed_by": ["bam_dedup_stats_samtools_umitools"]
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"installed_by": ["bam_dedup_stats_samtools_umitools"],
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"patch": "modules/nf-core/umitools/dedup/umitools-dedup.diff"
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},
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"umitools/extract": {
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"branch": "master",
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"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
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"installed_by": ["fastq_fastqc_umitools_fastp", "fastq_fastqc_umitools_trimgalore"]
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"installed_by": ["fastq_fastqc_umitools_fastp", "fastq_fastqc_umitools_trimgalore"],
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"patch": "modules/nf-core/umitools/extract/umitools-extract.diff"
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},
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"untar": {
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"branch": "master",

modules/nf-core/fastp/fastp.diff

+32
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modules/nf-core/fastp/main.nf

+3-3
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modules/nf-core/fastqc/fastqc.diff

+23
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modules/nf-core/fastqc/main.nf

+2-2
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modules/nf-core/umitools/dedup/main.nf

+2-2
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modules/nf-core/umitools/dedup/umitools-dedup.diff

+23
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modules/nf-core/umitools/extract/main.nf

+2-2
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modules/nf-core/umitools/extract/umitools-extract.diff

+23
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