From 1f1ce76e38cfcf9a7445eae811c8bd569cacf0cc Mon Sep 17 00:00:00 2001
From: Yvan Le Bras <yvan.le-bras@mnhn.fr>
Date: Fri, 14 Jan 2022 09:46:10 +0100
Subject: [PATCH] Update EU wf hyperlinks

Following https://github.com/galaxyproject/SARS-CoV-2/issues/301 Issue
---
 genomics/global_platform/README.md | 10 +++++-----
 1 file changed, 5 insertions(+), 5 deletions(-)

diff --git a/genomics/global_platform/README.md b/genomics/global_platform/README.md
index eaa72ae8..cedbc383 100644
--- a/genomics/global_platform/README.md
+++ b/genomics/global_platform/README.md
@@ -52,11 +52,11 @@ Workflow description. Clicking <kbd>US</kbd>, <kbd>EU</kbd>, or <kbd>AU</kbd> bu
 
 | Workflow | Input data | Read aligner | Variant caller |
 |----------|-------------|---|---|---|
-|1. Illumina RNAseq SE<br>[<kbd>EU</kbd>](https://usegalaxy.eu/u/wolfgang-maier/w/covid-19-variation-analysis-on-se-data)[<kbd>US</kbd>](https://usegalaxy.org/u/aun1/w/covid-19-variation-analysis-on-wgs-se-data)[<kbd>AU</kbd>](https://usegalaxy.org.au/u/nekrut/w/covid-19-variation-analysis-on-wgs-se-data) |  Single end data derived from RNAseq experiments | `bowtie2` | `lofreq` |
-|2.  Illumina RNAseq PE<br>[<kbd>EU</kbd>](https://usegalaxy.eu/u/wolfgang-maier/w/covid-19-variation-analysis-on-pe-data)[<kbd>US</kbd>](https://usegalaxy.org/u/aun1/w/covid-19-variation-analysis-on-wgs-pe-data)[<kbd>AU</kbd>](https://usegalaxy.org.au/u/nekrut/w/covid-19-variation-analysis-on-wgs-pe-data) |  Paired end data derived from RNAseq experiments | `bwa-mem` | `lofreq` |
-|3.  Illumina ARTIC<br>[<kbd>EU</kbd>](https://usegalaxy.eu/u/wolfgang-maier/w/covid19-variation-analysis-on-artic-pe)[<kbd>US</kbd>](https://usegalaxy.org/u/aun1/w/covid-19-variation-analysis-on-artic-pe-data-1)[<kbd>AU</kbd>](https://usegalaxy.org.au/u/nekrut/w/covid-19-variation-analysis-on-artic-pe-data) |   Paired-end data generated with ARTIC protocols | `bwa-mem` | `lofreq` |
-|4.  ONT ARTIC<br>[<kbd>EU</kbd>](https://usegalaxy.eu/u/wolfgang-maier/w/covid-19-variation-analysis-of-artic-ont-data)[<kbd>US</kbd>](https://usegalaxy.org/u/aun1/w/covid-19-variation-analysis-of-artic-ont-data)[<kbd>AU</kbd>](https://usegalaxy.org.au/u/nekrut/w/covid-19-variation-analysis-of-artic-ont-data ) |  ONT fastq files generated with ARTIC protocols | `minimap2` | `medaka` |
-|5.  Reporting<br>[<kbd>EU</kbd>](https://usegalaxy.eu/u/wolfgang-maier/w/covid19-variation-analysis-reporting)[<kbd>US</kbd>](https://usegalaxy.org/u/aun1/w/covid-19-variation-analysis-reporting)[<kbd>AU</kbd>](https://usegalaxy.org.au/u/nekrut/w/covid-19-variation-analysis-reporting)| Output of any of the above workflows | - | - |
+|1. Illumina RNAseq SE<br>[<kbd>EU</kbd>](https://usegalaxy.eu/u/sars-cov2-bot/w/covid-19-variation-analysis-on-wgs-se-data---iwc-version-012)[<kbd>US</kbd>](https://usegalaxy.org/u/aun1/w/covid-19-variation-analysis-on-wgs-se-data)[<kbd>AU</kbd>](https://usegalaxy.org.au/u/nekrut/w/covid-19-variation-analysis-on-wgs-se-data) |  Single end data derived from RNAseq experiments | `bowtie2` | `lofreq` |
+|2.  Illumina RNAseq PE<br>[<kbd>EU</kbd>](https://usegalaxy.eu/u/sars-cov2-bot/w/covid-19-variation-analysis-on-wgs-pe-data-imported-from-uploaded-file)[<kbd>US</kbd>](https://usegalaxy.org/u/aun1/w/covid-19-variation-analysis-on-wgs-pe-data)[<kbd>AU</kbd>](https://usegalaxy.org.au/u/nekrut/w/covid-19-variation-analysis-on-wgs-pe-data) |  Paired end data derived from RNAseq experiments | `bwa-mem` | `lofreq` |
+|3.  Illumina ARTIC<br>[<kbd>EU</kbd>](https://usegalaxy.eu/u/sars-cov2-bot/w/covid-19-variation-analysis-on-artic-pe-data-3)[<kbd>US</kbd>](https://usegalaxy.org/u/aun1/w/covid-19-variation-analysis-on-artic-pe-data-1)[<kbd>AU</kbd>](https://usegalaxy.org.au/u/nekrut/w/covid-19-variation-analysis-on-artic-pe-data) |   Paired-end data generated with ARTIC protocols | `bwa-mem` | `lofreq` |
+|4.  ONT ARTIC<br>[<kbd>EU</kbd>](https://usegalaxy.eu/u/sars-cov2-bot/w/covid-19-variation-analysis-of-artic-ont-data---iwc-version-03)[<kbd>US</kbd>](https://usegalaxy.org/u/aun1/w/covid-19-variation-analysis-of-artic-ont-data)[<kbd>AU</kbd>](https://usegalaxy.org.au/u/nekrut/w/covid-19-variation-analysis-of-artic-ont-data ) |  ONT fastq files generated with ARTIC protocols | `minimap2` | `medaka` |
+|5.  Reporting<br>[<kbd>EU</kbd>](https://usegalaxy.eu/u/sars-cov2-bot/w/imported-covid-19-variation-analysis-reporting)[<kbd>US</kbd>](https://usegalaxy.org/u/aun1/w/covid-19-variation-analysis-reporting)[<kbd>AU</kbd>](https://usegalaxy.org.au/u/nekrut/w/covid-19-variation-analysis-reporting)| Output of any of the above workflows | - | - |
 
 ## Application of workflows for analysis of intrahost variation