What happened?
equilibrium simulations tohoku[2,3]d fail to setup input with PyGemini.
by copy pasting the command, this is also seen on a laptop.
python3 -m gemini3d.model cfg/equilibrium/tohoku2d_eq /tmp/tohoku2d_eq
Relevant log output
23/154 Test #73: setup:python:tohoku3d_eq ............................***Failed 19.62 sec
Traceback (most recent call last):
File "/miniconda3/lib/python3.10/runpy.py", line 196, in _run_module_as_main
return _run_code(code, main_globals, None,
File "/miniconda3/lib/python3.10/runpy.py", line 86, in _run_code
exec(code, run_globals)
File "/code/pygemini/src/gemini3d/model.py", line 220, in <module>
cli()
File "/code/pygemini/src/gemini3d/model.py", line 216, in cli
setup(P.config_file, P.out_dir, P.root)
File "/code/pygemini/src/gemini3d/model.py", line 143, in setup
equilibrium(cfg)
File "/code/pygemini/src/gemini3d/model.py", line 159, in equilibrium
dat = equilibrium_state(cfg, xg)
File "/code/pygemini/src/gemini3d/plasma.py", line 423, in equilibrium_state
ns = np.concatenate((ns, ns[:, lx1, :, :], ns[:, ::-1, :, :]), 1)
IndexError: index 95 is out of bounds for axis 1 with size 95
11/154 Test #64: setup:python:tohoku2d_eq ............................***Failed 2.60 sec
Traceback (most recent call last):
File "/miniconda3/lib/python3.10/runpy.py", line 196, in _run_module_as_main
return _run_code(code, main_globals, None,
File "/miniconda3/lib/python3.10/runpy.py", line 86, in _run_code
exec(code, run_globals)
File "/code/pygemini/src/gemini3d/model.py", line 220, in <module>
cli()
File "/code/pygemini/src/gemini3d/model.py", line 216, in cli
setup(P.config_file, P.out_dir, P.root)
File "/code/pygemini/src/gemini3d/model.py", line 143, in setup
equilibrium(cfg)
File "/code/pygemini/src/gemini3d/model.py", line 159, in equilibrium
dat = equilibrium_state(cfg, xg)
File "/code/pygemini/src/gemini3d/plasma.py", line 423, in equilibrium_state
ns = np.concatenate((ns, ns[:, lx1, :, :], ns[:, ::-1, :, :]), 1)
IndexError: index 127 is out of bounds for axis 1 with size 127
What happened?
equilibrium simulations tohoku[2,3]d fail to setup input with PyGemini.
by copy pasting the command, this is also seen on a laptop.
Relevant log output