Overlay databases: use --overlay-changes #9404

Job	Run time
check-codeql-versions	50s
analyze-actions	58s
analyze-javascript (ubuntu-20.04)	4m 12s
analyze-javascript (windows-2022)	7m 44s
analyze-javascript (windows-2019)	6m 50s
analyze-javascript (macos-13, linked)	6m 49s
analyze-javascript (macos-13)	9m 10s
analyze-javascript (windows-2019, linked)	7m 9s
analyze-javascript (ubuntu-20.04, linked)	4m 29s
analyze-javascript (ubuntu-22.04, linked)	4m 11s
analyze-javascript (ubuntu-22.04)	4m 2s
analyze-javascript (windows-2022, linked)	6m 30s
analyze-javascript (macos-14, linked)	4m 39s
analyze-javascript (macos-14)	4m 31s
	1h 12m 4s

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