review indicates that http://arctos.database.museum/guid/MSB:Herp:105034 is referenced, but cannot be resolved

[jhpoelen]

retrieved from https://depot.globalbioticinteractions.org/reviews/globalbioticinteractions/msb-para/README.txt on 2022-09-28

   _____ _       ____ _____   _____            _                
  / ____| |     |  _ \_   _| |  __ \          (_)               
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 | | |_ | |/ _ \|  _ < | |   |  _  // _ \ \ / / |/ _ \ \ /\ / / 
 | |__| | | (_) | |_) || |_  | | \ \  __/\ V /| |  __/\ V  V /  
  \_____|_|\___/|____/_____| |_|  \_\___| \_/ |_|\___| \_/\_/   
 | |           |  ____| | |                                     
 | |__  _   _  | |__  | | |_ ___  _ __                          
 | '_ \| | | | |  __| | | __/ _ \| '_ \                         
 | |_) | |_| | | |____| | || (_) | | | |                        
 |_.__/ \__, | |______|_|\__\___/|_| |_|                        
         __/ |                                                  
        |___/                                                   
⚠️ Disclaimer: The results in this review should be considered
friendly, yet naive, notes from an unsophisticated robot. 
Please carefully review the results listed below and share issues/ideas
by email info at globalbioticinteractions.org or by opening an issue at 
https://github.com/globalbioticinteractions/globalbioticinteractions/issues .

Review of [globalbioticinteractions/msb-para] started at [2022-09-04T13:54:32+02:00].

Review of [globalbioticinteractions/msb-para] included:
  - 60648 interaction(s)
  - 2244 note(s)
  - 38 info(s)

[globalbioticinteractions/msb-para] has 2244 reviewer note(s):
[...]
      1 found unresolved reference [http://arctos.database.museum/guid/MSB:Herp:105034]

[jhpoelen]

@campmlc any chance the MSB:Herp collection was recently added?

[jhpoelen]

via

GBIF doesn't know about it . . . yet
https://www.gbif.org/occurrence/search?occurrence_id=http:~2F~2Farctos.database.museum~2Fguid~2FMSB:Herp:105033&advanced=1

But, after scanning all of vertnet using Preston and Vertnet's RSS feed -

time preston track http://ipt.vertnet.org:8080/ipt/rss.do\
 | preston dwc-stream\
 | grep "MSB:Herp:105033"\
 | jq .\
 | tee msb_herp_105033.json

in about 26 minutes

real    26m4.016s
user    29m47.106s
sys     7m59.988s

I believe I found the MSB Herp records:

 "http://www.w3.org/ns/prov#wasDerivedFrom": "line:zip:hash://sha256/2628eba52be00182df70d300b01b10604d509d5b1731ab5dfa1f0675f04b543b!/occurrence.txt!/L47321",
  "http://www.w3.org/1999/02/22-rdf-syntax-ns#type": "http://rs.tdwg.org/dwc/terms/Occurrence",
  "http://rs.tdwg.org/dwc/text/id": "http://arctos.database.museum/guid/MSB:Herp:105033?seid=5220675",

see also msb_herp_105033.json.txt and related records http://arctos.database.museum/guid/MSB:Host:24607?seid=5163738 , http://arctos.database.museum/guid/MSB:Para:32179?seid=5159492 http://arctos.database.museum/guid/MSB:Herp:105033?seid=5220675 .

The actual record found was:

preston cat --remote https://linker.bio 'line:zip:hash://sha256/2628eba52be00182df70d300b01b10604d509d5b1731ab5dfa1f0675f04b543b!/occurrence.txt!/L47321'

http://arctos.database.museum/guid/MSB:Herp:105033?seid=5220675	2021-12-23 13:10:00.005639	http://creativecommons.org/licenses/by-nc/3.0	http://vertnet.org/resources/norms.html	http://arctos.database.museum/guid/MSB:Herp:105033	MSB	18	MSB	Herp	PreservedSpecimen			http://arctos.database.museum/guid/MSB:Herp:105033?seid=5220675	MSB:Herp:105033		Collector(s): Christopher Caris					unverified			(host of) MSB:Para http://arctos.database.museum/guid/MSB:Para:32179; (same individual as) MSB:Host http://arctos.database.museum/guid/MSB:Host:24607					http://arctos.database.museum/guid/MSB:Herp:105033	[{"scientific_name":"Ambystoma californiense","nature_of_id":"unknown","accepted_id_fg":1,"made_date":"2019-09-30","short_citation":null,"publication_id":null,"identification_remarks":null,"idby":"Christopher Caris","concept_label":null}]		2019-09-30	2019-09-30	273	2019	09	30	2019-09-30				North America, United States, California, Santa Cruz County	North America				United States	California	Santa Cruz County	Prospect Pond	Prospect Pond					Christopher Caris		36.9214500000	-121.8264410000	unknown		36.92145/-121.826441	decimal degrees	POLYGON((-121.826435387461 36.9214499445451,-121.826435508779 36.9214490664699,-121.826435841121 36.9214482242698,-121.826436371716 36.92144745031,-121.826437080174 36.9214467743333,-121.826437939268 36.9214462223172,-121.826438915984 36.9214458154754,-121.826439972788 36.9214455694424,-121.826441069067 36.9214454936733,-121.826442162692 36.9214455910797,-121.826443211635 36.9214458579185,-121.826444175587 36.9214462839351,-121.826445017502 36.921446852758,-121.826445705027 36.9214475425277,-121.82644621174 36.9214483267366,-121.826446518169 36.9214491752481,-121.826446612538 36.9214500554544,-121.82644649122 36.9214509335295,-121.826446158878 36.9214517757297,-121.826445628283 36.9214525496895,-121.826444919826 36.9214532256663,-121.826444060732 36.9214537776824,-121.826443084015 36.9214541845243,-121.826442027211 36.9214544305573,-121.826440930932 36.9214545063265,-121.826439837307 36.92145440892,-121.826438788364 36.9214541420812,-121.826437824413 36.9214537160645,-121.826436982497 36.9214531472415,-121.826436294972 36.9214524574718,-121.826435788259 36.9214516732629,-121.82643548183 36.9214508247513,-121.826435387461 36.9214499445451))	Christopher Caris	2019-09-30 00:00:00	not recorded	GPS transcribed									A		Christopher Caris	2019-09-30		unknown		Ambystoma californiense	Animalia, Chordata, Amphibia, Caudata, Salamandroidea, Ambystomatidae, Ambystoma,	Animalia	Chordata	Amphibia	Caudata	Ambystomatidae	Ambystoma	californiense		species	ICZN

Now, I was able to find the provenance of this record using:

$ preston ls | grep "hash://sha256/2628eba52be00182df70d300b01b10604d509d5b1731ab5dfa1f0675f04b543b"
<hash://sha256/2628eba52be00182df70d300b01b10604d509d5b1731ab5dfa1f0675f04b543b> <http://www.w3.org/ns/prov#wasGeneratedBy> <urn:uuid:8a6642d4-ef10-41c5-aa1b-d1c079df8989> <urn:uuid:8a6642d4-ef10-41c5-aa1b-d1c079df8989> .
<hash://sha256/2628eba52be00182df70d300b01b10604d509d5b1731ab5dfa1f0675f04b543b> <http://www.w3.org/ns/prov#qualifiedGeneration> <urn:uuid:8a6642d4-ef10-41c5-aa1b-d1c079df8989> <urn:uuid:8a6642d4-ef10-41c5-aa1b-d1c079df8989> .
<http://ipt.vertnet.org:8080/ipt/archive.do?r=msb_herp> <http://purl.org/pav/hasVersion> <hash://sha256/2628eba52be00182df70d300b01b10604d509d5b1731ab5dfa1f0675f04b543b> <urn:uuid:8a6642d4-ef10-41c5-aa1b-d1c079df8989> .

Suggesting that the MSB Herp is published via http://ipt.vertnet.org:8080/ipt/archive.do?r=msb_herp

[campmlc]

I will forward to our herp CM, thanks!

[jhpoelen]

@campmlc much appreciated!

[jhpoelen]

@campmlc as far as I can tell, with the updated index configuration, GloBI should be able to now resolve your herp records. Just waiting for the changes to propagate.

[campmlc]

No, but it was published to GBIF prior to joining Arctos, so maybe some weirdness there that should be resolved. I sent an email to our collection manager.

…

On Wed, Sep 28, 2022 at 7:29 AM Jorrit Poelen ***@***.***> wrote: * [EXTERNAL]* @campmlc <https://github.com/campmlc> any chance the MSB:Herp collection was recently added? — Reply to this email directly, view it on GitHub <#9 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ADQ7JBGNN2US2QOPQPKMDD3WARB5BANCNFSM6AAAAAAQXZAO6Q> . You are receiving this because you were mentioned.Message ID: ***@***.***>