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DomFijanDomFijan
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add license headers to all files
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‎conftest.py

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# Copyright (c) 2023-2025 The Regents of the University of Michigan.
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# This file is from the dupin project, released under the BSD 3-Clause License.
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"""Provide fixture and other testing helpers."""
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import freud

‎dupin/__init__.py

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# Copyright (c) 2023-2025 The Regents of the University of Michigan.
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# This file is from the dupin project, released under the BSD 3-Clause License.
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"""Top-level package for event-detection."""
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__author__ = """Brandon Butler"""

‎dupin/data/__init__.py

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# Copyright (c) 2023-2025 The Regents of the University of Michigan.
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# This file is from the dupin project, released under the BSD 3-Clause License.
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"""Classes and functions for generating and recording system descriptors.
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Data Model

‎dupin/data/aggregate.py

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# Copyright (c) 2023-2025 The Regents of the University of Michigan.
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# This file is from the dupin project, released under the BSD 3-Clause License.
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"""Helper module for generating/storing features across an entire trajectory.
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This class provides the `SignalAggregator` class which takes a pipeline and

‎dupin/data/base.py

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# Copyright (c) 2023-2025 The Regents of the University of Michigan.
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# This file is from the dupin project, released under the BSD 3-Clause License.
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"""Base classes for the data module."""
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import typing

‎dupin/data/freud.py

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# Copyright (c) 2023-2025 The Regents of the University of Michigan.
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# This file is from the dupin project, released under the BSD 3-Clause License.
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"""Interface from `freud` to dupin.
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freud is a Python package for analyzing molecular trajectory data.

‎dupin/data/logging.py

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# Copyright (c) 2023-2025 The Regents of the University of Michigan.
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# This file is from the dupin project, released under the BSD 3-Clause License.
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"""Functions and classes for allowing logging extra data from pipelines.
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Logging serves as the only directly supported means of introspecting into the

‎dupin/data/map.py

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# Copyright (c) 2023-2025 The Regents of the University of Michigan.
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# This file is from the dupin project, released under the BSD 3-Clause License.
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"""`dupin.data.base.DataMap` subclasses to transform distributional data.
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Mapping in dupin is the idea of taking one distribution and transforming it

‎dupin/data/reduce.py

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# Copyright (c) 2023-2025 The Regents of the University of Michigan.
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# This file is from the dupin project, released under the BSD 3-Clause License.
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"""Classes for transforming array quantities into scalar features.
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Reduction in ``dupin`` takes an array and _reduces_ it to a set number of scalar

‎dupin/data/spatial.py

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# Copyright (c) 2023-2025 The Regents of the University of Michigan.
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# This file is from the dupin project, released under the BSD 3-Clause License.
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"""Spatial averaging DataMap classes."""
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import numpy as np

‎dupin/detect/__init__.py

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# Copyright (c) 2023-2025 The Regents of the University of Michigan.
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# This file is from the dupin project, released under the BSD 3-Clause License.
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"""Methods for event detection in molecular simulations.
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dupin provides classes and functions to help in the event detection process but

‎dupin/detect/costs.py

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# Copyright (c) 2023-2025 The Regents of the University of Michigan.
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# This file is from the dupin project, released under the BSD 3-Clause License.
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"""Implements cost functions for use in event detection."""
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from abc import ABC, abstractmethod

‎dupin/detect/detect.py

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# Copyright (c) 2023-2025 The Regents of the University of Michigan.
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# This file is from the dupin project, released under the BSD 3-Clause License.
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"""Implements offline methods for detecting events in molecular simulations."""
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import logging

‎dupin/errors.py

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# Copyright (c) 2023-2025 The Regents of the University of Michigan.
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# This file is from the dupin project, released under the BSD 3-Clause License.
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"""Base error classes or associated classes."""
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‎dupin/postprocessing.py

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# Copyright (c) 2023-2025 The Regents of the University of Michigan.
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# This file is from the dupin project, released under the BSD 3-Clause License.
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"""General functions for analyzing change points once detected.
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This module is designed to primarly work with logger data and the original

‎dupin/preprocessing/__init__.py

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# Copyright (c) 2023-2025 The Regents of the University of Michigan.
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# This file is from the dupin project, released under the BSD 3-Clause License.
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"""Perform various kinds of preprocessing on generated signals.
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This module provides resources for the transformation step of the event

‎dupin/preprocessing/filter.py

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# Copyright (c) 2023-2025 The Regents of the University of Michigan.
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# This file is from the dupin project, released under the BSD 3-Clause License.
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"""Feature selection schemes.
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This provides feature selection schemes distinct from packages like

‎dupin/preprocessing/signal.py

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# Copyright (c) 2023-2025 The Regents of the University of Michigan.
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# This file is from the dupin project, released under the BSD 3-Clause License.
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"""Functions for smoothing a signal.
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`scipy.signal` provides many additional methods for signal processing that can

‎dupin/preprocessing/supervised.py

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# Copyright (c) 2023-2025 The Regents of the University of Michigan.
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# This file is from the dupin project, released under the BSD 3-Clause License.
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"""Classes for use in utilizing supervised learning for event detection."""
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from collections.abc import Sequence

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