restructured website

Author: simongravelle

docs/doc-sphinx/source/howto.rst

@@ -38,9 +38,9 @@ <h2>
                     <section class="tiles">
                         <article class="style1">
                             <span class="image">
-                                <img src="doc-sphinx/source/tutorials/figures/bulksolution/avatar-gromacs.png" alt="gromacs tutorial logo" />
+                                <img src="sphinx/source/tutorials/figures/level1/bulk-solution/avatar-gromacs.png" alt="gromacs tutorial logo" />
                             </span>
-                            <a href="doc-sphinx/build/html/tutorials/bulksolution.html">
+                            <a href="sphinx/build/html/tutorials/level1/bulk-solution.html">
                                 <div class="content">
                                     <p align="left">
                                         Performing a <b>simple molecular dynamics</b>
@@ -50,9 +50,9 @@ <h2>
                         </article>
                         <article class="style1">
                             <span class="image">
-                                <img src="doc-sphinx/source/tutorials/figures/stretchingpolymer/avatar.png" alt="gromacs tutorial logo" />
+                                <img src="sphinx/source/tutorials/figures/level2/stretching-a-polymer/avatar.png" alt="gromacs tutorial logo" />
                             </span>
-                            <a href="doc-sphinx/build/html/tutorials/stretchingpolymer.html">
+                            <a href="sphinx/build/html/tutorials/level2/stretching-a-polymer.html">
                                 <div class="content">
                                     <p align="left">
                                         Pulling a <b>polymer in water</b>
@@ -62,9 +62,9 @@ <h2>
                         </article>
                         <article class="style1">
                             <span class="image">
-                                <img src="doc-sphinx/source/tutorials/figures/solvationenergy/no-field-dark.png" alt="gromacs tutorial logo" />
+                                <img src="sphinx/source/tutorials/figures/level3/solvation-energy/no-field-dark.png" alt="gromacs tutorial logo" />
                             </span>
-                            <a href="doc-sphinx/build/html/tutorials/solvationenergy.html">
+                            <a href="sphinx/build/html/tutorials/level3/solvation-energy.html">
                                 <div class="content">
                                     <p align="left">
                                         Calculating the <b>solvation free energy</b> of a graphene-like molecule

docs/gromacstutorials-inputs

@@ -1,4 +1,4 @@
 make clean
 make html
 cp source/index_replace.html build/html/index.html
-cp source/lammps_replace.html build/html/miscellaneous/lammps.html
+cp source/lammps_replace.html build/html/non-tutorials/lammps.html

docs/index.html

@@ -0,0 +1,4 @@
+# Sphinx build info version 1
+# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
+config: 6dcc9bf88d202444fb09b9570ad5fadf
+tags: 645f666f9bcd5a90fca523b33c5a78b7