liniting + clean up

Author: elenaivadreyer

.DS_Store

@@ -5,12 +5,12 @@ on:
     branches:
       - main
     paths:
-      - 'notebooks/tutorial_few_shot_learning.ipynb'
+      - 'tutorial.ipynb'
   pull_request:
     branches:
       - main
     paths:
-      - 'notebooks/tutorial_few_shot_learning.ipynb'
+      - 'tutorial.ipynb'
   workflow_dispatch:
 
 permissions:
@@ -38,7 +38,7 @@ jobs:
         run: |
           jupyter nbconvert \
             --to html \
-            notebooks/tutorial_few_shot_learning.ipynb \
+            tutorial.ipynb \
             --output tutorial_few_shot_learning.html \
             --output-dir docs/
 

.github/workflows/render-notebook.yml

@@ -151,14 +151,8 @@ dmypy.json
 
 # Cython debug symbols
 cython_debug/
-data/
 
 .DS_Store
 
-# Exclude not needed notebooks files
-#notebooks/exploration.ipynb
-notebooks/class_template.ipynb
-notebooks/few_shot_approaches_setup.ipynb
-
-presentation/tutorial-new-tutorial-group-1-NARRATIVE.html
-presentation/figures/tutorial-new-tutorial-group-1-NARRATIVE.ipynb
+# Exclude entire notebooks folder
+notebooks/

.gitignore

@@ -55,11 +55,12 @@ repos:
     rev: v0.8.2
     hooks:
       # Recommended to run linter first of automatic fixes are enabled (as some linting fixes might require reformatting)
-      - id: ruff
-        #Automatic linting fixes
-        types_or: [ python, pyi, jupyter ]
-        args: [ --fix ]
-        #stages: [manual]
       - id: ruff-format
-        types_or: [ python, pyi, jupyter ]
-        #stages: [manual]
+        types_or: [python, pyi, jupyter]
+        stages: [manual]
+
+      # Linter: optional auto-fixes
+      - id: ruff
+        args: [--fix]
+        types_or: [python, pyi, jupyter]
+        stages: [manual]