diff --git a/repomatic/tool_runner.py b/repomatic/tool_runner.py
index ab52d2939..aaf579801 100644
--- a/repomatic/tool_runner.py
+++ b/repomatic/tool_runner.py
@@ -606,7 +606,7 @@ def _fix_myst_directive_options(extra_args: Sequence[str]) -> None:
     "biome": ToolSpec(
         name="biome",
         display_name="Biome",
-        version="2.4.12",
+        version="2.4.13",
         source_url="https://github.com/biomejs/biome",
         config_docs_url="https://biomejs.dev/reference/configuration/",
         cli_docs_url="https://biomejs.dev/reference/cli/",
@@ -645,27 +645,27 @@ def _fix_myst_directive_options(extra_args: Sequence[str]) -> None:
                 (
                     LINUX,
                     AARCH64,
-                ): "8c01c56aa0701e12142de057ff4a0a220e73c32f7e606935024223c8650f069a",
+                ): "8aff839821c82ba5ba8455a52d8beacb02229697e781ebaa095f8442fdb6ae51",
                 (
                     LINUX,
                     X86_64,
-                ): "a0c50f60ed0a3c24450f5561eff58c8b9a91708c6b3f2f9ecd398a825d4a0861",
+                ): "f5a3cf9cbe40ba7dd8ecd469567cac00635462589a3acfe97e5d8cab8b866c1c",
                 (
                     MACOS,
                     AARCH64,
-                ): "ac5775441d77af4ef9f61827e6058b2ec21db469102c94ccd9d1c48d09d5c461",
+                ): "22eb03789d405ea84e7b01192a9b5a4885802468dd0f369613837f5b5935178b",
                 (
                     MACOS,
                     X86_64,
-                ): "2617d939c0076743cbc597d9e1531628a0346eb19e6916f9374cb6e8f203fe3b",
+                ): "2180d3467d67773daccea90855d8d65e1026ffa429ceba3edcb4553c8664627b",
                 (
                     WINDOWS,
                     AARCH64,
-                ): "df8552b36007c4339bda7d5328a5d41560f761fd24d53fffe31f58b171483b66",
+                ): "4ebfc108a649076b45d04ebb2a6b8a6642ab2180da893b70a5c42b15d4154da6",
                 (
                     WINDOWS,
                     X86_64,
-                ): "bb4309a0c05caf7377fc071b770d503c5e052a45f8ddea3c9dca34890f202189",
+                ): "bc7d1f26be936aec1423f70ed94fd8c5aa80c3ba199d991dcaf13476daa5f786",
             },
             archive_format=ArchiveFormat.RAW,
         ),