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Description
I've been trying out the linkml-renderer
with the b2ai-standards data and in most cases, it works very well. For some schemas (or some data?) it will throw a TypeError when rendering HTML, like this:
$ linkml-render -s src/schema/standards_schema_all.yaml -r UseCaseContainer -o test.html src/data/UseCase.yaml
Traceback (most recent call last):
File "/home/harry/b2ai-standards-registry/.venv/bin/linkml-render", line 8, in <module>
sys.exit(main())
File "/home/harry/b2ai-standards-registry/.venv/lib/python3.9/site-packages/click/core.py", line 1130, in __call__
return self.main(*args, **kwargs)
File "/home/harry/b2ai-standards-registry/.venv/lib/python3.9/site-packages/click/core.py", line 1055, in main
rv = self.invoke(ctx)
File "/home/harry/b2ai-standards-registry/.venv/lib/python3.9/site-packages/click/core.py", line 1404, in invoke
return ctx.invoke(self.callback, **ctx.params)
File "/home/harry/b2ai-standards-registry/.venv/lib/python3.9/site-packages/click/core.py", line 760, in invoke
return __callback(*args, **kwargs)
File "/home/harry/b2ai-standards-registry/.venv/lib/python3.9/site-packages/linkml_renderer/cli.py", line 81, in main
out = renderer.render(obj, sv, source_element_name=root)
File "/home/harry/b2ai-standards-registry/.venv/lib/python3.9/site-packages/linkml_renderer/renderers/html_renderer.py", line 70, in render
self.generate(element, ctxt)
File "/home/harry/b2ai-standards-registry/.venv/lib/python3.9/site-packages/linkml_renderer/renderers/html_renderer.py", line 98, in generate
return self.generate_document(element, context)
File "/home/harry/b2ai-standards-registry/.venv/lib/python3.9/site-packages/linkml_renderer/renderers/html_renderer.py", line 183, in generate_document
self.generate(element, context.extend(None, "body"))
File "/home/harry/b2ai-standards-registry/.venv/lib/python3.9/site-packages/linkml_renderer/renderers/html_renderer.py", line 134, in generate
return self.generate_object(element, context)
File "/home/harry/b2ai-standards-registry/.venv/lib/python3.9/site-packages/linkml_renderer/renderers/html_renderer.py", line 235, in generate_object
self.generate(v, context.extend(slot))
File "/home/harry/b2ai-standards-registry/.venv/lib/python3.9/site-packages/linkml_renderer/renderers/html_renderer.py", line 119, in generate
return self.elements_to_table(elements, context)
File "/home/harry/b2ai-standards-registry/.venv/lib/python3.9/site-packages/linkml_renderer/renderers/html_renderer.py", line 300, in elements_to_table
self.generate(v, context.extend(slot, "table"))
File "/home/harry/b2ai-standards-registry/.venv/lib/python3.9/site-packages/linkml_renderer/renderers/html_renderer.py", line 107, in generate
raise TypeError(f"Unexpected type for collection: {type(element)}")
TypeError: Unexpected type for collection: <class 'str'>
The same error is raised when attempting to render this data as markdown.
The schema and data are both valid as far as I can tell.
For comparison, this completes as expected:
$ linkml-render -s src/schema/standards_schema_all.yaml -r DataTopicContainer -t markdown -o test.md src/data/DataTopic.yaml
This is with version 0.1.2.
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