Skip to content

Add tool for ingesting variables from dbgap #112

@cmungall

Description

@cmungall

E.g.

https://ftp.ncbi.nlm.nih.gov/dbgap/studies/phs000228/phs000228.v4.p1/pheno_variable_summaries/phs000228.v4.pht002156.v1.EMMES_HMP_DSU.data_dict.xml

e.g

  <variable id="phv00158592.v1">
    <name>DSUDIET</name>
    <description>Diet</description>
    <type>Integer, encoded value</type>
    <logical_min>1</logical_min>
    <logical_max>5</logical_max>
    <value code="01">01-Meat/fish/poultry at least three days per week</value>
    <value code="02">02-Meat/fish/poultry at least one day but not more than two days per week</value>
    <value code="03">03-Eggs/cheese/other dairy products, but no meat/fish/poultry</value>
    <value code="04">04-No animal products at all (no meat/fish/poultry, no eggs/cheese/other dairy products)</value>
    <value code="05">05-No animal products and at least 70% of fruits and vegetables are eaten raw</value>
  </variable>
  • name -> name
  • description -> description
  • type -> range
  • max/min -> max/min
  • values -> permissible values in enum

Metadata

Metadata

Assignees

No one assigned

    Labels

    enhancementNew feature or request

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions