transitive dependencies clash: CTC-Measures->SimplifiedIO->loci vs. Mastodon-beta-28->Bioformats

[xulman]

taken from @aherbert from PR #9

Note: CTC-Measures use SimplifiedIO which includes some loci code. The new Mastodon beta-28 brings in Bioformats via a dependency which includes a lot of the same class files. I added an exclusion in the pom for the loci jar to get this to build. If you remove the exclusion and run:

mvn compile
the duplicates will be shown by the maven enforcer plugin used by scijava-pom.

I did not investigate updating CTC-Measures to see if there is a way to avoid SimplifiedIO and Bioformats clashing. I also did not check that all the classes used by SimplifiedIO are duplicated in the Bioformats jars. You can view the transitive dependencies using:

mvn dependency:tree
from this project and the CTC-Measures project.

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It indeed must not be forgotten and should be fixed eventually....