Always use local htslib #332
Workflow file for this run
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| name: Install deps, make,make test, makes upload folder | |
| on: | |
| push: | |
| branches: [ '**' ] | |
| pull_request: | |
| branches: [ '**' ] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install dependencies | |
| run: sudo apt-get update;sudo apt-get install -y libbz2-dev liblzma-dev libcurl4-openssl-dev libgsl-dev samtools | |
| - name: Compile htslib | |
| run: | | |
| git clone --branch=develop --recursive https://github.com/samtools/htslib.git | |
| cd htslib | |
| make | |
| cd ../ | |
| - name: make | |
| run: | | |
| export CPATH=`pwd`/htslib:${CPATH} | |
| export LD_LIBRARY_PATH=`pwd`/htslib:${LD_LIBRARY_PATH} | |
| export LIBRARY_PATH=`pwd`/htslib:${LIBRARY_PATH} | |
| make | |
| - name: make test | |
| run: make test | |
| - name: Upload test/output folder | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: test-output | |
| path: | | |
| test/output | |
| test/testAll.sh | |
| test/testAll.sh.log |