Fix ARC3 errors

Author: Mike Croucher

hpc/arc3_leeds.sge

@@ -6,12 +6,13 @@
 #$ -l h_rt=8:00:00
 
 #Install miniconda if it isn't there already
-if [ ! -d ./miniconda/]; then
-wget https://repo.continuum.io/miniconda/Miniconda3-3.7.0-Linux-x86_64.sh -O ~/miniconda.sh
-bash ./miniconda.sh -b -p $HOME/miniconda
+if [ ! -d ./miniconda/ ]; then
+	wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O ./miniconda.sh
+	bash ./miniconda.sh -b -p $PWD/miniconda
 fi
 #Add miniconda to the path
-export PATH="$CWD/miniconda/bin:$PATH"
+export PATH="$PWD/miniconda/bin:$PATH"
+source $PWD/miniconda/bin/activate
 
 #Create conda environment if it doesn't already exist
 environment_name=testing123