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allclasses-frame.html
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<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
<!-- NewPage -->
<html lang="en">
<head>
<!-- Generated by javadoc (1.8.0_202) on Sun May 05 11:55:52 EDT 2019 -->
<meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
<title>All Classes (MSDK - Mass Spectrometry Development Kit 0.0.20 API)</title>
<meta name="date" content="2019-05-05">
<link rel="stylesheet" type="text/css" href="stylesheet.css" title="Style">
<script type="text/javascript" src="script.js"></script>
</head>
<body>
<h1 class="bar">All Classes</h1>
<div class="indexContainer">
<ul>
<li><a href="fr/profi/mzdb/io/reader/bb/AbstractBlobReader.html" title="class in fr.profi.mzdb.io.reader.bb" target="classFrame">AbstractBlobReader</a></li>
<li><a href="fr/profi/mzdb/io/reader/cache/AbstractDataEncodingReader.html" title="class in fr.profi.mzdb.io.reader.cache" target="classFrame">AbstractDataEncodingReader</a></li>
<li><a href="fr/profi/mzdb/util/misc/AbstractInMemoryIdGen.html" title="class in fr.profi.mzdb.util.misc" target="classFrame">AbstractInMemoryIdGen</a></li>
<li><a href="io/github/msdk/datamodel/AbstractMsSpectrum.html" title="class in io.github.msdk.datamodel" target="classFrame">AbstractMsSpectrum</a></li>
<li><a href="fr/profi/mzdb/AbstractMzDbReader.html" title="class in fr.profi.mzdb" target="classFrame">AbstractMzDbReader</a></li>
<li><a href="fr/profi/mzdb/db/model/params/AbstractParamTree.html" title="class in fr.profi.mzdb.db.model.params" target="classFrame">AbstractParamTree</a></li>
<li><a href="fr/profi/mzdb/io/reader/cache/AbstractRunSliceHeaderReader.html" title="class in fr.profi.mzdb.io.reader.cache" target="classFrame">AbstractRunSliceHeaderReader</a></li>
<li><a href="fr/profi/mzdb/io/reader/iterator/AbstractRunSliceIterator.html" title="class in fr.profi.mzdb.io.reader.iterator" target="classFrame">AbstractRunSliceIterator</a></li>
<li><a href="fr/profi/mzdb/io/reader/cache/AbstractSpectrumHeaderReader.html" title="class in fr.profi.mzdb.io.reader.cache" target="classFrame">AbstractSpectrumHeaderReader</a></li>
<li><a href="fr/profi/mzdb/io/reader/iterator/AbstractSpectrumSliceIterator.html" title="class in fr.profi.mzdb.io.reader.iterator" target="classFrame">AbstractSpectrumSliceIterator</a></li>
<li><a href="fr/profi/mzdb/io/reader/iterator/AbstractStatementIterator.html" title="class in fr.profi.mzdb.io.reader.iterator" target="classFrame">AbstractStatementIterator</a></li>
<li><a href="fr/profi/mzdb/db/model/AbstractTableModel.html" title="class in fr.profi.mzdb.db.model" target="classFrame">AbstractTableModel</a></li>
<li><a href="fr/profi/mzdb/io/reader/table/AbstractTableModelReader.html" title="class in fr.profi.mzdb.io.reader.table" target="classFrame">AbstractTableModelReader</a></li>
<li><a href="fr/profi/mzdb/model/AcquisitionMode.html" title="enum in fr.profi.mzdb.model" target="classFrame">AcquisitionMode</a></li>
<li><a href="fr/profi/mzdb/db/model/params/Activation.html" title="class in fr.profi.mzdb.db.model.params" target="classFrame">Activation</a></li>
<li><a href="io/github/msdk/datamodel/ActivationInfo.html" title="interface in io.github.msdk.datamodel" target="classFrame"><span class="interfaceName">ActivationInfo</span></a></li>
<li><a href="io/github/msdk/datamodel/ActivationType.html" title="enum in io.github.msdk.datamodel" target="classFrame">ActivationType</a></li>
<li><a href="io/github/msdk/featuredetection/adap3d/ADAP3DFeatureDetectionMethod.html" title="class in io.github.msdk.featuredetection.adap3d" target="classFrame">ADAP3DFeatureDetectionMethod</a></li>
<li><a href="io/github/msdk/featuredetection/adap3d/ADAP3DFeatureDetectionParameters.html" title="class in io.github.msdk.featuredetection.adap3d" target="classFrame">ADAP3DFeatureDetectionParameters</a></li>
<li><a href="io/github/msdk/featuredetection/adap3d/algorithms/ADAP3DPeakDetectionAlgorithm.html" title="class in io.github.msdk.featuredetection.adap3d.algorithms" target="classFrame">ADAP3DPeakDetectionAlgorithm</a></li>
<li><a href="io/github/msdk/featuredetection/adap3d/algorithms/ADAP3DPeakDetectionAlgorithm.GoodPeakInfo.html" title="class in io.github.msdk.featuredetection.adap3d.algorithms" target="classFrame">ADAP3DPeakDetectionAlgorithm.GoodPeakInfo</a></li>
<li><a href="io/github/msdk/alignment/ransac/AlignStructMol.html" title="class in io.github.msdk.alignment.ransac" target="classFrame">AlignStructMol</a></li>
<li><a href="fr/profi/mzdb/db/model/params/AnalyzerComponent.html" title="class in fr.profi.mzdb.db.model.params" target="classFrame">AnalyzerComponent</a></li>
<li><a href="io/github/msdk/util/ArrayUtil.html" title="class in io.github.msdk.util" target="classFrame">ArrayUtil</a></li>
<li><a href="fr/profi/mzdb/BBSizes.html" title="class in fr.profi.mzdb" target="classFrame">BBSizes</a></li>
<li><a href="io/github/msdk/featuredetection/adap3d/algorithms/BiGaussian.html" title="class in io.github.msdk.featuredetection.adap3d.algorithms" target="classFrame">BiGaussian</a></li>
<li><a href="io/github/msdk/featuredetection/adap3d/algorithms/BiGaussianSimilarityTest.html" title="class in io.github.msdk.featuredetection.adap3d.algorithms" target="classFrame">BiGaussianSimilarityTest</a></li>
<li><a href="io/github/msdk/spectra/centroiding/BinningCentroidingAlgorithm.html" title="class in io.github.msdk.spectra.centroiding" target="classFrame">BinningCentroidingAlgorithm</a></li>
<li><a href="fr/profi/mzdb/model/BoundingBox.html" title="class in fr.profi.mzdb.model" target="classFrame">BoundingBox</a></li>
<li><a href="fr/profi/mzdb/io/reader/bb/BoundingBoxBuilder.html" title="class in fr.profi.mzdb.io.reader.bb" target="classFrame">BoundingBoxBuilder</a></li>
<li><a href="fr/profi/mzdb/io/reader/iterator/BoundingBoxIterator.html" title="class in fr.profi.mzdb.io.reader.iterator" target="classFrame">BoundingBoxIterator</a></li>
<li><a href="fr/profi/mzdb/db/table/BoundingBoxMsnRtreeTable.html" title="enum in fr.profi.mzdb.db.table" target="classFrame">BoundingBoxMsnRtreeTable</a></li>
<li><a href="fr/profi/mzdb/db/table/BoundingBoxRtreeTable.html" title="enum in fr.profi.mzdb.db.table" target="classFrame">BoundingBoxRtreeTable</a></li>
<li><a href="fr/profi/mzdb/db/table/BoundingBoxTable.html" title="enum in fr.profi.mzdb.db.table" target="classFrame">BoundingBoxTable</a></li>
<li><a href="fr/profi/mzdb/util/iterator/BufferedIterator.html" title="class in fr.profi.mzdb.util.iterator" target="classFrame">BufferedIterator</a></li>
<li><a href="io/github/msdk/io/mzml/util/ByteBufferInputStream.html" title="class in io.github.msdk.io.mzml.util" target="classFrame">ByteBufferInputStream</a></li>
<li><a href="io/github/msdk/io/mzxml/ByteBufferInputStreamAdapter.html" title="class in io.github.msdk.io.mzxml" target="classFrame">ByteBufferInputStreamAdapter</a></li>
<li><a href="fr/profi/mzdb/io/reader/bb/BytesReader.html" title="class in fr.profi.mzdb.io.reader.bb" target="classFrame">BytesReader</a></li>
<li><a href="fr/profi/mzdb/util/primitives/BytesUtils.html" title="class in fr.profi.mzdb.util.primitives" target="classFrame">BytesUtils</a></li>
<li><a href="fr/profi/mzdb/util/concurrent/CallableCallback.html" title="class in fr.profi.mzdb.util.concurrent" target="classFrame">CallableCallback</a></li>
<li><a href="fr/profi/mzdb/util/concurrent/Callback.html" title="interface in fr.profi.mzdb.util.concurrent" target="classFrame"><span class="interfaceName">Callback</span></a></li>
<li><a href="io/github/msdk/io/chromatof/ChromaTofFileImportMethod.html" title="class in io.github.msdk.io.chromatof" target="classFrame">ChromaTofFileImportMethod</a></li>
<li><a href="io/github/msdk/io/chromatof/ChromaTofParser.html" title="class in io.github.msdk.io.chromatof" target="classFrame">ChromaTofParser</a></li>
<li><a href="io/github/msdk/io/chromatof/ChromaTofParser.ColumnName.html" title="enum in io.github.msdk.io.chromatof" target="classFrame">ChromaTofParser.ColumnName</a></li>
<li><a href="io/github/msdk/io/chromatof/ChromaTofParser.Mode.html" title="enum in io.github.msdk.io.chromatof" target="classFrame">ChromaTofParser.Mode</a></li>
<li><a href="io/github/msdk/io/chromatof/ChromaTofParser.TableColumn.html" title="class in io.github.msdk.io.chromatof" target="classFrame">ChromaTofParser.TableColumn</a></li>
<li><a href="fr/profi/mzdb/model/Chromatogram.html" title="class in fr.profi.mzdb.model" target="classFrame">Chromatogram</a></li>
<li><a href="io/github/msdk/datamodel/Chromatogram.html" title="interface in io.github.msdk.datamodel" target="classFrame"><span class="interfaceName">Chromatogram</span></a></li>
<li><a href="io/github/msdk/featuredetection/chromatogrambuilder/ChromatogramBuilderMethod.html" title="class in io.github.msdk.featuredetection.chromatogrambuilder" target="classFrame">ChromatogramBuilderMethod</a></li>
<li><a href="fr/profi/mzdb/db/table/ChromatogramTable.html" title="enum in fr.profi.mzdb.db.table" target="classFrame">ChromatogramTable</a></li>
<li><a href="io/github/msdk/datamodel/ChromatogramType.html" title="enum in io.github.msdk.datamodel" target="classFrame">ChromatogramType</a></li>
<li><a href="io/github/msdk/util/ChromatogramUtil.html" title="class in io.github.msdk.util" target="classFrame">ChromatogramUtil</a></li>
<li><a href="io/github/msdk/util/ChromatogramUtil.CalculationMethod.html" title="enum in io.github.msdk.util" target="classFrame">ChromatogramUtil.CalculationMethod</a></li>
<li><a href="fr/profi/mzdb/db/model/params/Component.html" title="class in fr.profi.mzdb.db.model.params" target="classFrame">Component</a></li>
<li><a href="fr/profi/mzdb/db/model/params/ComponentList.html" title="class in fr.profi.mzdb.db.model.params" target="classFrame">ComponentList</a></li>
<li><a href="io/github/msdk/util/tolerances/ConstantDaTolerance.html" title="class in io.github.msdk.util.tolerances" target="classFrame">ConstantDaTolerance</a></li>
<li><a href="io/github/msdk/util/tolerances/ConstantPpmTolerance.html" title="class in io.github.msdk.util.tolerances" target="classFrame">ConstantPpmTolerance</a></li>
<li><a href="io/github/msdk/id/sirius/ConstraintsGenerator.html" title="class in io.github.msdk.id.sirius" target="classFrame">ConstraintsGenerator</a></li>
<li><a href="io/github/msdk/featuredetection/adap3d/algorithms/ContinuousWaveletTransform.html" title="class in io.github.msdk.featuredetection.adap3d.algorithms" target="classFrame">ContinuousWaveletTransform</a></li>
<li><a href="io/github/msdk/featuredetection/adap3d/algorithms/ContinuousWaveletTransform.DataPoint.html" title="class in io.github.msdk.featuredetection.adap3d.algorithms" target="classFrame">ContinuousWaveletTransform.DataPoint</a></li>
<li><a href="fr/profi/mzdb/db/table/ControlledVocabularyTable.html" title="enum in fr.profi.mzdb.db.table" target="classFrame">ControlledVocabularyTable</a></li>
<li><a href="io/github/msdk/rawdata/filters/CropFilterAlgorithm.html" title="class in io.github.msdk.rawdata.filters" target="classFrame">CropFilterAlgorithm</a></li>
<li><a href="io/github/msdk/featuredetection/adap3d/algorithms/CurveTool.html" title="class in io.github.msdk.featuredetection.adap3d.algorithms" target="classFrame">CurveTool</a></li>
<li><a href="fr/profi/mzdb/db/model/params/param/CVEntry.html" title="enum in fr.profi.mzdb.db.model.params.param" target="classFrame">CVEntry</a></li>
<li><a href="fr/profi/mzdb/db/model/params/param/CVParam.html" title="class in fr.profi.mzdb.db.model.params.param" target="classFrame">CVParam</a></li>
<li><a href="fr/profi/mzdb/db/table/CvTable.html" title="enum in fr.profi.mzdb.db.table" target="classFrame">CvTable</a></li>
<li><a href="fr/profi/mzdb/model/DataEncoding.html" title="class in fr.profi.mzdb.model" target="classFrame">DataEncoding</a></li>
<li><a href="fr/profi/mzdb/io/reader/cache/DataEncodingAsyncReader.html" title="class in fr.profi.mzdb.io.reader.cache" target="classFrame">DataEncodingAsyncReader</a></li>
<li><a href="fr/profi/mzdb/io/reader/cache/DataEncodingReader.html" title="class in fr.profi.mzdb.io.reader.cache" target="classFrame">DataEncodingReader</a></li>
<li><a href="fr/profi/mzdb/db/table/DataEncodingTable.html" title="enum in fr.profi.mzdb.db.table" target="classFrame">DataEncodingTable</a></li>
<li><a href="fr/profi/mzdb/model/DataMode.html" title="enum in fr.profi.mzdb.model" target="classFrame">DataMode</a></li>
<li><a href="fr/profi/mzdb/model/DataPoint.html" title="class in fr.profi.mzdb.model" target="classFrame">DataPoint</a></li>
<li><a href="io/github/msdk/util/DataPointSorter.html" title="class in io.github.msdk.util" target="classFrame">DataPointSorter</a></li>
<li><a href="io/github/msdk/util/DataPointSorter.SortingDirection.html" title="enum in io.github.msdk.util" target="classFrame">DataPointSorter.SortingDirection</a></li>
<li><a href="io/github/msdk/util/DataPointSorter.SortingProperty.html" title="enum in io.github.msdk.util" target="classFrame">DataPointSorter.SortingProperty</a></li>
<li><a href="fr/profi/mzdb/db/table/DataProcessingTable.html" title="enum in fr.profi.mzdb.db.table" target="classFrame">DataProcessingTable</a></li>
<li><a href="fr/profi/mzdb/io/writer/mgf/DefaultPrecursorComputer.html" title="class in fr.profi.mzdb.io.writer.mgf" target="classFrame">DefaultPrecursorComputer</a></li>
<li><a href="fr/profi/mzdb/db/model/params/DetectorComponent.html" title="class in fr.profi.mzdb.db.model.params" target="classFrame">DetectorComponent</a></li>
<li><a href="io/github/msdk/spectra/centroiding/ExactMassCentroidingAlgorithm.html" title="class in io.github.msdk.spectra.centroiding" target="classFrame">ExactMassCentroidingAlgorithm</a></li>
<li><a href="fr/profi/mzdb/util/threading/Executor.html" title="class in fr.profi.mzdb.util.threading" target="classFrame">Executor</a></li>
<li><a href="io/github/msdk/datamodel/Feature.html" title="interface in io.github.msdk.datamodel" target="classFrame"><span class="interfaceName">Feature</span></a></li>
<li><a href="io/github/msdk/featuredetection/openms/FeatureFinderMetaboDetector.html" title="class in io.github.msdk.featuredetection.openms" target="classFrame">FeatureFinderMetaboDetector</a></li>
<li><a href="io/github/msdk/featuredetection/openms/FeatureFinderMetaboLocator.html" title="class in io.github.msdk.featuredetection.openms" target="classFrame">FeatureFinderMetaboLocator</a></li>
<li><a href="io/github/msdk/normalization/compound/FeatureNormalizationByCompoundMethod.html" title="class in io.github.msdk.normalization.compound" target="classFrame">FeatureNormalizationByCompoundMethod</a></li>
<li><a href="io/github/msdk/datamodel/FeatureTable.html" title="interface in io.github.msdk.datamodel" target="classFrame"><span class="interfaceName">FeatureTable</span></a></li>
<li><a href="io/github/msdk/io/FeatureTableImportMethod.html" title="class in io.github.msdk.io" target="classFrame">FeatureTableImportMethod</a></li>
<li><a href="io/github/msdk/datamodel/FeatureTableRow.html" title="interface in io.github.msdk.datamodel" target="classFrame"><span class="interfaceName">FeatureTableRow</span></a></li>
<li><a href="io/github/msdk/util/FeatureTableUtil.html" title="class in io.github.msdk.util" target="classFrame">FeatureTableUtil</a></li>
<li><a href="io/github/msdk/featuredetection/adap3d/algorithms/FeatureTools.html" title="class in io.github.msdk.featuredetection.adap3d.algorithms" target="classFrame">FeatureTools</a></li>
<li><a href="io/github/msdk/io/mzml/util/FileMemoryMapper.html" title="class in io.github.msdk.io.mzml.util" target="classFrame">FileMemoryMapper</a></li>
<li><a href="io/github/msdk/datamodel/FileType.html" title="enum in io.github.msdk.datamodel" target="classFrame">FileType</a></li>
<li><a href="io/github/msdk/io/filetypedetection/FileTypeDetectionAlgorithm.html" title="class in io.github.msdk.io.filetypedetection" target="classFrame">FileTypeDetectionAlgorithm</a></li>
<li><a href="io/github/msdk/id/sirius/FingerIdWebMethod.html" title="class in io.github.msdk.id.sirius" target="classFrame">FingerIdWebMethod</a></li>
<li><a href="io/github/msdk/featuredetection/gridmass/GridMassMethod.html" title="class in io.github.msdk.featuredetection.gridmass" target="classFrame">GridMassMethod</a></li>
<li><a href="io/github/msdk/datamodel/GroupedFeature.html" title="interface in io.github.msdk.datamodel" target="classFrame"><span class="interfaceName">GroupedFeature</span></a></li>
<li><a href="fr/profi/mzdb/io/reader/bb/IBlobReader.html" title="interface in fr.profi.mzdb.io.reader.bb" target="classFrame"><span class="interfaceName">IBlobReader</span></a></li>
<li><a href="fr/profi/mzdb/model/ILcContext.html" title="interface in fr.profi.mzdb.model" target="classFrame"><span class="interfaceName">ILcContext</span></a></li>
<li><a href="fr/profi/mzdb/db/model/IMzDBParamNameGetter.html" title="interface in fr.profi.mzdb.db.model" target="classFrame"><span class="interfaceName">IMzDBParamNameGetter</span></a></li>
<li><a href="fr/profi/mzdb/io/reader/table/InstrumentConfigReader.html" title="class in fr.profi.mzdb.io.reader.table" target="classFrame">InstrumentConfigReader</a></li>
<li><a href="fr/profi/mzdb/db/model/InstrumentConfiguration.html" title="class in fr.profi.mzdb.db.model" target="classFrame">InstrumentConfiguration</a></li>
<li><a href="fr/profi/mzdb/db/table/InstrumentConfigurationTable.html" title="enum in fr.profi.mzdb.db.table" target="classFrame">InstrumentConfigurationTable</a></li>
<li><a href="io/github/msdk/datamodel/IonAnnotation.html" title="interface in io.github.msdk.datamodel" target="classFrame"><span class="interfaceName">IonAnnotation</span></a></li>
<li><a href="io/github/msdk/datamodel/IonType.html" title="interface in io.github.msdk.datamodel" target="classFrame"><span class="interfaceName">IonType</span></a></li>
<li><a href="io/github/msdk/util/IonTypeUtil.html" title="class in io.github.msdk.util" target="classFrame">IonTypeUtil</a></li>
<li><a href="fr/profi/mzdb/db/model/params/IParamContainer.html" title="interface in fr.profi.mzdb.db.model.params" target="classFrame"><span class="interfaceName">IParamContainer</span></a></li>
<li><a href="fr/profi/mzdb/io/writer/mgf/IPrecursorComputation.html" title="interface in fr.profi.mzdb.io.writer.mgf" target="classFrame"><span class="interfaceName">IPrecursorComputation</span></a></li>
<li><a href="io/github/msdk/datamodel/IsolationInfo.html" title="interface in io.github.msdk.datamodel" target="classFrame"><span class="interfaceName">IsolationInfo</span></a></li>
<li><a href="fr/profi/mzdb/model/IsolationWindow.html" title="class in fr.profi.mzdb.model" target="classFrame">IsolationWindow</a></li>
<li><a href="fr/profi/mzdb/db/model/params/IsolationWindowParamTree.html" title="class in fr.profi.mzdb.db.model.params" target="classFrame">IsolationWindowParamTree</a></li>
<li><a href="io/github/msdk/isotopes/isotopegrouper/IsotopeGrouperMethod.html" title="class in io.github.msdk.isotopes.isotopegrouper" target="classFrame">IsotopeGrouperMethod</a></li>
<li><a href="io/github/msdk/isotopes/isotopepattern/IsotopePatternGeneratorAlgorithm.html" title="class in io.github.msdk.isotopes.isotopepattern" target="classFrame">IsotopePatternGeneratorAlgorithm</a></li>
<li><a href="fr/profi/mzdb/util/sqlite/ISQLiteConnectionFunction.html" title="interface in fr.profi.mzdb.util.sqlite" target="classFrame"><span class="interfaceName">ISQLiteConnectionFunction</span></a></li>
<li><a href="fr/profi/mzdb/util/sqlite/ISQLiteRecordExtraction.html" title="interface in fr.profi.mzdb.util.sqlite" target="classFrame"><span class="interfaceName">ISQLiteRecordExtraction</span></a></li>
<li><a href="fr/profi/mzdb/util/sqlite/ISQLiteRecordOperation.html" title="interface in fr.profi.mzdb.util.sqlite" target="classFrame"><span class="interfaceName">ISQLiteRecordOperation</span></a></li>
<li><a href="fr/profi/mzdb/util/sqlite/ISQLiteStatementConsumer.html" title="interface in fr.profi.mzdb.util.sqlite" target="classFrame"><span class="interfaceName">ISQLiteStatementConsumer</span></a></li>
<li><a href="fr/profi/mzdb/io/reader/iterator/IStatementExtractor.html" title="interface in fr.profi.mzdb.io.reader.iterator" target="classFrame"><span class="interfaceName">IStatementExtractor</span></a></li>
<li><a href="fr/profi/mzdb/util/lambda/JavaStreamExceptionWrappers.html" title="interface in fr.profi.mzdb.util.lambda" target="classFrame"><span class="interfaceName">JavaStreamExceptionWrappers</span></a></li>
<li><a href="io/github/msdk/alignment/joinaligner/JoinAlignerMethod.html" title="class in io.github.msdk.alignment.joinaligner" target="classFrame">JoinAlignerMethod</a></li>
<li><a href="fr/profi/mzdb/io/reader/iterator/LcMsnRunSliceIterator.html" title="class in fr.profi.mzdb.io.reader.iterator" target="classFrame">LcMsnRunSliceIterator</a></li>
<li><a href="fr/profi/mzdb/io/reader/iterator/LcMsRunSliceIterator.html" title="class in fr.profi.mzdb.io.reader.iterator" target="classFrame">LcMsRunSliceIterator</a></li>
<li><a href="io/github/msdk/id/sirius/LocalArrayUtil.html" title="class in io.github.msdk.id.sirius" target="classFrame">LocalArrayUtil</a></li>
<li><a href="io/github/msdk/id/localdatabase/LocalDatabaseSearchMethod.html" title="class in io.github.msdk.id.localdatabase" target="classFrame">LocalDatabaseSearchMethod</a></li>
<li><a href="io/github/msdk/spectra/centroiding/LocalMaximaCentroidingAlgorithm.html" title="class in io.github.msdk.spectra.centroiding" target="classFrame">LocalMaximaCentroidingAlgorithm</a></li>
<li><a href="io/github/msdk/featuredetection/adap3d/algorithms/Math.html" title="class in io.github.msdk.featuredetection.adap3d.algorithms" target="classFrame">Math</a></li>
<li><a href="io/github/msdk/util/MathUtils.html" title="class in io.github.msdk.util" target="classFrame">MathUtils</a></li>
<li><a href="io/github/msdk/util/tolerances/MaximumMzTolerance.html" title="class in io.github.msdk.util.tolerances" target="classFrame">MaximumMzTolerance</a></li>
<li><a href="io/github/msdk/rawdata/filters/MeanFilterAlgorithm.html" title="class in io.github.msdk.rawdata.filters" target="classFrame">MeanFilterAlgorithm</a></li>
<li><a href="fr/profi/mzdb/io/writer/mgf/MgfField.html" title="enum in fr.profi.mzdb.io.writer.mgf" target="classFrame">MgfField</a></li>
<li><a href="io/github/msdk/io/mgf/MgfFileExportMethod.html" title="class in io.github.msdk.io.mgf" target="classFrame">MgfFileExportMethod</a></li>
<li><a href="io/github/msdk/io/mgf/MgfFileImportMethod.html" title="class in io.github.msdk.io.mgf" target="classFrame">MgfFileImportMethod</a></li>
<li><a href="fr/profi/mzdb/io/writer/mgf/MgfHeader.html" title="class in fr.profi.mzdb.io.writer.mgf" target="classFrame">MgfHeader</a></li>
<li><a href="fr/profi/mzdb/io/writer/mgf/MgfHeaderEntry.html" title="class in fr.profi.mzdb.io.writer.mgf" target="classFrame">MgfHeaderEntry</a></li>
<li><a href="io/github/msdk/io/mgf/MgfMsSpectrum.html" title="class in io.github.msdk.io.mgf" target="classFrame">MgfMsSpectrum</a></li>
<li><a href="fr/profi/mzdb/io/writer/mgf/MgfWriter.html" title="class in fr.profi.mzdb.io.writer.mgf" target="classFrame">MgfWriter</a></li>
<li><a href="io/github/msdk/spectra/centroiding/MSDKCentroidingAlgorithm.html" title="interface in io.github.msdk.spectra.centroiding" target="classFrame"><span class="interfaceName">MSDKCentroidingAlgorithm</span></a></li>
<li><a href="io/github/msdk/spectra/centroiding/MSDKCentroidingMethod.html" title="class in io.github.msdk.spectra.centroiding" target="classFrame">MSDKCentroidingMethod</a></li>
<li><a href="io/github/msdk/MSDKConstraintViolationException.html" title="class in io.github.msdk" target="classFrame">MSDKConstraintViolationException</a></li>
<li><a href="io/github/msdk/MSDKException.html" title="class in io.github.msdk" target="classFrame">MSDKException</a></li>
<li><a href="io/github/msdk/rawdata/filters/MSDKFilteringAlgorithm.html" title="interface in io.github.msdk.rawdata.filters" target="classFrame"><span class="interfaceName">MSDKFilteringAlgorithm</span></a></li>
<li><a href="io/github/msdk/rawdata/filters/MSDKFilteringMethod.html" title="class in io.github.msdk.rawdata.filters" target="classFrame">MSDKFilteringMethod</a></li>
<li><a href="io/github/msdk/MSDKMethod.html" title="interface in io.github.msdk" target="classFrame"><span class="interfaceName">MSDKMethod</span></a></li>
<li><a href="io/github/msdk/MSDKRuntimeException.html" title="class in io.github.msdk" target="classFrame">MSDKRuntimeException</a></li>
<li><a href="io/github/msdk/spectra/similarity/MSDKSpectraComparisonAlgorithm.html" title="interface in io.github.msdk.spectra.similarity" target="classFrame"><span class="interfaceName">MSDKSpectraComparisonAlgorithm</span></a></li>
<li><a href="io/github/msdk/MSDKVersion.html" title="class in io.github.msdk" target="classFrame">MSDKVersion</a></li>
<li><a href="io/github/msdk/featuredetection/msmsdetection/MsMsDetectionMethod.html" title="class in io.github.msdk.featuredetection.msmsdetection" target="classFrame">MsMsDetectionMethod</a></li>
<li><a href="io/github/msdk/io/mzml/util/MSNumpress.html" title="class in io.github.msdk.io.mzml.util" target="classFrame">MSNumpress</a></li>
<li><a href="io/github/msdk/io/msp/MspExportAlgorithm.html" title="class in io.github.msdk.io.msp" target="classFrame">MspExportAlgorithm</a></li>
<li><a href="io/github/msdk/io/msp/MspImportAlgorithm.html" title="class in io.github.msdk.io.msp" target="classFrame">MspImportAlgorithm</a></li>
<li><a href="io/github/msdk/io/msp/MspSpectrum.html" title="class in io.github.msdk.io.msp" target="classFrame">MspSpectrum</a></li>
<li><a href="io/github/msdk/datamodel/MsScan.html" title="interface in io.github.msdk.datamodel" target="classFrame"><span class="interfaceName">MsScan</span></a></li>
<li><a href="io/github/msdk/datamodel/MsScanType.html" title="enum in io.github.msdk.datamodel" target="classFrame">MsScanType</a></li>
<li><a href="io/github/msdk/util/MsScanUtil.html" title="class in io.github.msdk.util" target="classFrame">MsScanUtil</a></li>
<li><a href="io/github/msdk/datamodel/MsSpectrum.html" title="interface in io.github.msdk.datamodel" target="classFrame"><span class="interfaceName">MsSpectrum</span></a></li>
<li><a href="fr/profi/mzdb/io/writer/MsSpectrumTSVWriter.html" title="class in fr.profi.mzdb.io.writer" target="classFrame">MsSpectrumTSVWriter</a></li>
<li><a href="io/github/msdk/datamodel/MsSpectrumType.html" title="enum in io.github.msdk.datamodel" target="classFrame">MsSpectrumType</a></li>
<li><a href="io/github/msdk/util/MsSpectrumUtil.html" title="class in io.github.msdk.util" target="classFrame">MsSpectrumUtil</a></li>
<li><a href="fr/profi/mzdb/util/ms/MsUtils.html" title="class in fr.profi.mzdb.util.ms" target="classFrame">MsUtils</a></li>
<li><a href="fr/profi/mzdb/util/primitives/MutableInt.html" title="class in fr.profi.mzdb.util.primitives" target="classFrame">MutableInt</a></li>
<li><a href="io/github/msdk/io/mzdata/MzDataFileImportMethod.html" title="class in io.github.msdk.io.mzdata" target="classFrame">MzDataFileImportMethod</a></li>
<li><a href="fr/profi/mzdb/cli/MzDbAccess.html" title="class in fr.profi.mzdb.cli" target="classFrame">MzDbAccess</a></li>
<li><a href="fr/profi/mzdb/cli/MzDbAccess.CreateMgfCommand.html" title="class in fr.profi.mzdb.cli" target="classFrame">MzDbAccess.CreateMgfCommand</a></li>
<li><a href="fr/profi/mzdb/cli/MzDbAccess.DebugCommand.html" title="class in fr.profi.mzdb.cli" target="classFrame">MzDbAccess.DebugCommand</a></li>
<li><a href="fr/profi/mzdb/cli/MzDbAccess.ExtractPeaksCommand.html" title="class in fr.profi.mzdb.cli" target="classFrame">MzDbAccess.ExtractPeaksCommand</a></li>
<li><a href="fr/profi/mzdb/MzDbAsyncReader.html" title="class in fr.profi.mzdb" target="classFrame">MzDbAsyncReader</a></li>
<li><a href="fr/profi/mzdb/io/reader/cache/MzDbEntityCache.html" title="class in fr.profi.mzdb.io.reader.cache" target="classFrame">MzDbEntityCache</a></li>
<li><a href="fr/profi/mzdb/io/reader/cache/MzDbEntityCacheContainer.html" title="class in fr.profi.mzdb.io.reader.cache" target="classFrame">MzDbEntityCacheContainer</a></li>
<li><a href="io/github/msdk/io/mzdb/MzDBFileImportMethod.html" title="class in io.github.msdk.io.mzdb" target="classFrame">MzDBFileImportMethod</a></li>
<li><a href="fr/profi/mzdb/db/model/MzDbHeader.html" title="class in fr.profi.mzdb.db.model" target="classFrame">MzDbHeader</a></li>
<li><a href="fr/profi/mzdb/io/reader/table/MzDbHeaderReader.html" title="class in fr.profi.mzdb.io.reader.table" target="classFrame">MzDbHeaderReader</a></li>
<li><a href="fr/profi/mzdb/db/model/MzDBParamName_0_8.html" title="class in fr.profi.mzdb.db.model" target="classFrame">MzDBParamName_0_8</a></li>
<li><a href="fr/profi/mzdb/db/model/MzDBParamName_0_9.html" title="class in fr.profi.mzdb.db.model" target="classFrame">MzDBParamName_0_9</a></li>
<li><a href="io/github/msdk/io/mzdb/MzDBRawDataFile.html" title="class in io.github.msdk.io.mzdb" target="classFrame">MzDBRawDataFile</a></li>
<li><a href="fr/profi/mzdb/MzDbReader.html" title="class in fr.profi.mzdb" target="classFrame">MzDbReader</a></li>
<li><a href="fr/profi/mzdb/MzDbReaderHelper.html" title="class in fr.profi.mzdb" target="classFrame">MzDbReaderHelper</a></li>
<li><a href="fr/profi/mzdb/io/reader/MzDbReaderQueries.html" title="class in fr.profi.mzdb.io.reader" target="classFrame">MzDbReaderQueries</a></li>
<li><a href="fr/profi/mzdb/db/table/MzdbTable.html" title="enum in fr.profi.mzdb.db.table" target="classFrame">MzdbTable</a></li>
<li><a href="io/github/msdk/io/mzml/data/MzMLArrayType.html" title="enum in io.github.msdk.io.mzml.data" target="classFrame">MzMLArrayType</a></li>
<li><a href="io/github/msdk/io/mzml/data/MzMLBinaryDataInfo.html" title="class in io.github.msdk.io.mzml.data" target="classFrame">MzMLBinaryDataInfo</a></li>
<li><a href="io/github/msdk/io/mzml/data/MzMLBitLength.html" title="enum in io.github.msdk.io.mzml.data" target="classFrame">MzMLBitLength</a></li>
<li><a href="io/github/msdk/io/mzml/data/MzMLCompressionType.html" title="enum in io.github.msdk.io.mzml.data" target="classFrame">MzMLCompressionType</a></li>
<li><a href="io/github/msdk/io/mzml/data/MzMLCV.html" title="class in io.github.msdk.io.mzml.data" target="classFrame">MzMLCV</a></li>
<li><a href="io/github/msdk/io/mzml/data/MzMLCVGroup.html" title="class in io.github.msdk.io.mzml.data" target="classFrame">MzMLCVGroup</a></li>
<li><a href="io/github/msdk/io/mzml/data/MzMLCVParam.html" title="class in io.github.msdk.io.mzml.data" target="classFrame">MzMLCVParam</a></li>
<li><a href="io/github/msdk/io/mzml/MzMLFileExportMethod.html" title="class in io.github.msdk.io.mzml" target="classFrame">MzMLFileExportMethod</a></li>
<li><a href="io/github/msdk/io/mzml/MzMLFileImportMethod.html" title="class in io.github.msdk.io.mzml" target="classFrame">MzMLFileImportMethod</a></li>
<li><a href="io/github/msdk/io/mzml/data/MzMLIsolationWindow.html" title="class in io.github.msdk.io.mzml.data" target="classFrame">MzMLIsolationWindow</a></li>
<li><a href="io/github/msdk/io/mzml/data/MzMLMsScan.html" title="class in io.github.msdk.io.mzml.data" target="classFrame">MzMLMsScan</a></li>
<li><a href="io/github/msdk/io/mzml/data/MzMLParser.html" title="class in io.github.msdk.io.mzml.data" target="classFrame">MzMLParser</a></li>
<li><a href="io/github/msdk/io/mzml/data/MzMLPeaksDecoder.html" title="class in io.github.msdk.io.mzml.data" target="classFrame">MzMLPeaksDecoder</a></li>
<li><a href="io/github/msdk/io/mzml/data/MzMLPeaksEncoder.html" title="class in io.github.msdk.io.mzml.data" target="classFrame">MzMLPeaksEncoder</a></li>
<li><a href="io/github/msdk/io/mzml/data/MzMLPrecursorActivation.html" title="class in io.github.msdk.io.mzml.data" target="classFrame">MzMLPrecursorActivation</a></li>
<li><a href="io/github/msdk/io/mzml/data/MzMLPrecursorElement.html" title="class in io.github.msdk.io.mzml.data" target="classFrame">MzMLPrecursorElement</a></li>
<li><a href="io/github/msdk/io/mzml/data/MzMLPrecursorList.html" title="class in io.github.msdk.io.mzml.data" target="classFrame">MzMLPrecursorList</a></li>
<li><a href="io/github/msdk/io/mzml/data/MzMLPrecursorSelectedIon.html" title="class in io.github.msdk.io.mzml.data" target="classFrame">MzMLPrecursorSelectedIon</a></li>
<li><a href="io/github/msdk/io/mzml/data/MzMLPrecursorSelectedIonList.html" title="class in io.github.msdk.io.mzml.data" target="classFrame">MzMLPrecursorSelectedIonList</a></li>
<li><a href="io/github/msdk/io/mzml/data/MzMLProduct.html" title="class in io.github.msdk.io.mzml.data" target="classFrame">MzMLProduct</a></li>
<li><a href="io/github/msdk/io/mzml/data/MzMLProductList.html" title="class in io.github.msdk.io.mzml.data" target="classFrame">MzMLProductList</a></li>
<li><a href="io/github/msdk/io/mzml/data/MzMLRawDataFile.html" title="class in io.github.msdk.io.mzml.data" target="classFrame">MzMLRawDataFile</a></li>
<li><a href="io/github/msdk/io/mzml/data/MzMLReferenceableParamGroup.html" title="class in io.github.msdk.io.mzml.data" target="classFrame">MzMLReferenceableParamGroup</a></li>
<li><a href="io/github/msdk/io/mzml/data/MzMLScan.html" title="class in io.github.msdk.io.mzml.data" target="classFrame">MzMLScan</a></li>
<li><a href="io/github/msdk/io/mzml/data/MzMLScanList.html" title="class in io.github.msdk.io.mzml.data" target="classFrame">MzMLScanList</a></li>
<li><a href="io/github/msdk/io/mzml/data/MzMLScanWindow.html" title="class in io.github.msdk.io.mzml.data" target="classFrame">MzMLScanWindow</a></li>
<li><a href="io/github/msdk/io/mzml/data/MzMLScanWindowList.html" title="class in io.github.msdk.io.mzml.data" target="classFrame">MzMLScanWindowList</a></li>
<li><a href="io/github/msdk/io/mzml/data/MzMLTags.html" title="class in io.github.msdk.io.mzml.data" target="classFrame">MzMLTags</a></li>
<li><a href="io/github/msdk/io/mztab/MzTabFileExportMethod.html" title="class in io.github.msdk.io.mztab" target="classFrame">MzTabFileExportMethod</a></li>
<li><a href="io/github/msdk/io/mztab/MzTabFileImportMethod.html" title="class in io.github.msdk.io.mztab" target="classFrame">MzTabFileImportMethod</a></li>
<li><a href="io/github/msdk/util/tolerances/MzTolerance.html" title="interface in io.github.msdk.util.tolerances" target="classFrame"><span class="interfaceName">MzTolerance</span></a></li>
<li><a href="io/github/msdk/io/mzxml/MzXMLFileImportMethod.html" title="class in io.github.msdk.io.mzxml" target="classFrame">MzXMLFileImportMethod</a></li>
<li><a href="io/github/msdk/io/mzxml/MzXMLFileMemoryMapper.html" title="class in io.github.msdk.io.mzxml" target="classFrame">MzXMLFileMemoryMapper</a></li>
<li><a href="io/github/msdk/io/mzxml/MzXMLFileParser.html" title="class in io.github.msdk.io.mzxml" target="classFrame">MzXMLFileParser</a></li>
<li><a href="io/github/msdk/io/mzxml/MzXMLRawDataFile.html" title="class in io.github.msdk.io.mzxml" target="classFrame">MzXMLRawDataFile</a></li>
<li><a href="io/github/msdk/id/sirius/NativeLibraryLoader.html" title="class in io.github.msdk.id.sirius" target="classFrame">NativeLibraryLoader</a></li>
<li><a href="io/github/msdk/io/netcdf/NetCDFFileExportMethod.html" title="class in io.github.msdk.io.netcdf" target="classFrame">NetCDFFileExportMethod</a></li>
<li><a href="io/github/msdk/io/netcdf/NetCDFFileImportMethod.html" title="class in io.github.msdk.io.netcdf" target="classFrame">NetCDFFileImportMethod</a></li>
<li><a href="io/github/msdk/io/netcdf/NetCDFMsScan.html" title="class in io.github.msdk.io.netcdf" target="classFrame">NetCDFMsScan</a></li>
<li><a href="io/github/msdk/io/netcdf/NetCDFRawDataFile.html" title="class in io.github.msdk.io.netcdf" target="classFrame">NetCDFRawDataFile</a></li>
<li><a href="io/github/msdk/normalization/compound/NormalizationType.html" title="enum in io.github.msdk.normalization.compound" target="classFrame">NormalizationType</a></li>
<li><a href="fr/profi/mzdb/util/iterator/NullIterator.html" title="class in fr.profi.mzdb.util.iterator" target="classFrame">NullIterator</a></li>
<li><a href="io/github/msdk/io/chromatof/Pair.html" title="class in io.github.msdk.io.chromatof" target="classFrame">Pair</a></li>
<li><a href="fr/profi/mzdb/db/model/params/ParamTree.html" title="class in fr.profi.mzdb.db.model.params" target="classFrame">ParamTree</a></li>
<li><a href="fr/profi/mzdb/io/reader/table/ParamTreeParser.html" title="class in fr.profi.mzdb.io.reader.table" target="classFrame">ParamTreeParser</a></li>
<li><a href="fr/profi/mzdb/db/table/ParamTreeSchemaTable.html" title="enum in fr.profi.mzdb.db.table" target="classFrame">ParamTreeSchemaTable</a></li>
<li><a href="io/github/msdk/io/chromatof/ParserUtilities.html" title="class in io.github.msdk.io.chromatof" target="classFrame">ParserUtilities</a></li>
<li><a href="fr/profi/mzdb/model/Peak.html" title="class in fr.profi.mzdb.model" target="classFrame">Peak</a></li>
<li><a href="io/github/msdk/featuredetection/adap3d/datamodel/Peak.html" title="class in io.github.msdk.featuredetection.adap3d.datamodel" target="classFrame">Peak</a></li>
<li><a href="io/github/msdk/featuredetection/adap3d/algorithms/Peak3DTest.html" title="class in io.github.msdk.featuredetection.adap3d.algorithms" target="classFrame">Peak3DTest</a></li>
<li><a href="io/github/msdk/featuredetection/adap3d/algorithms/Peak3DTest.Result.html" title="class in io.github.msdk.featuredetection.adap3d.algorithms" target="classFrame">Peak3DTest.Result</a></li>
<li><a href="fr/profi/mzdb/model/PeakEncoding.html" title="enum in fr.profi.mzdb.model" target="classFrame">PeakEncoding</a></li>
<li><a href="io/github/msdk/featuredetection/adap3d/datamodel/PeakInfo.html" title="class in io.github.msdk.featuredetection.adap3d.datamodel" target="classFrame">PeakInfo</a></li>
<li><a href="io/github/msdk/spectra/peakinvestigator/providers/PeakInvestigatorDefaultProviderFactory.html" title="class in io.github.msdk.spectra.peakinvestigator.providers" target="classFrame">PeakInvestigatorDefaultProviderFactory</a></li>
<li><a href="io/github/msdk/spectra/peakinvestigator/providers/PeakInvestigatorInitProvider.html" title="interface in io.github.msdk.spectra.peakinvestigator.providers" target="classFrame"><span class="interfaceName">PeakInvestigatorInitProvider</span></a></li>
<li><a href="io/github/msdk/spectra/peakinvestigator/PeakInvestigatorMsSpectrum.html" title="class in io.github.msdk.spectra.peakinvestigator" target="classFrame">PeakInvestigatorMsSpectrum</a></li>
<li><a href="io/github/msdk/spectra/peakinvestigator/PeakInvestigatorMsSpectrum.Error.html" title="class in io.github.msdk.spectra.peakinvestigator" target="classFrame">PeakInvestigatorMsSpectrum.Error</a></li>
<li><a href="io/github/msdk/spectra/peakinvestigator/providers/PeakInvestigatorOptionsProvider.html" title="interface in io.github.msdk.spectra.peakinvestigator.providers" target="classFrame"><span class="interfaceName">PeakInvestigatorOptionsProvider</span></a></li>
<li><a href="io/github/msdk/spectra/peakinvestigator/providers/PeakInvestigatorProjectProvider.html" title="interface in io.github.msdk.spectra.peakinvestigator.providers" target="classFrame"><span class="interfaceName">PeakInvestigatorProjectProvider</span></a></li>
<li><a href="io/github/msdk/spectra/peakinvestigator/providers/PeakInvestigatorProvider.html" title="interface in io.github.msdk.spectra.peakinvestigator.providers" target="classFrame"><span class="interfaceName">PeakInvestigatorProvider</span></a></li>
<li><a href="io/github/msdk/spectra/peakinvestigator/providers/PeakInvestigatorProvider.Status.html" title="enum in io.github.msdk.spectra.peakinvestigator.providers" target="classFrame">PeakInvestigatorProvider.Status</a></li>
<li><a href="io/github/msdk/spectra/peakinvestigator/providers/PeakInvestigatorProviderFactory.html" title="interface in io.github.msdk.spectra.peakinvestigator.providers" target="classFrame"><span class="interfaceName">PeakInvestigatorProviderFactory</span></a></li>
<li><a href="io/github/msdk/spectra/peakinvestigator/PeakInvestigatorScanBundlingMethod.html" title="class in io.github.msdk.spectra.peakinvestigator" target="classFrame">PeakInvestigatorScanBundlingMethod</a></li>
<li><a href="io/github/msdk/spectra/peakinvestigator/PeakInvestigatorScanExtractingMethod.html" title="class in io.github.msdk.spectra.peakinvestigator" target="classFrame">PeakInvestigatorScanExtractingMethod</a></li>
<li><a href="io/github/msdk/datamodel/PolarityType.html" title="enum in io.github.msdk.datamodel" target="classFrame">PolarityType</a></li>
<li><a href="fr/profi/mzdb/db/model/params/Precursor.html" title="class in fr.profi.mzdb.db.model.params" target="classFrame">Precursor</a></li>
<li><a href="fr/profi/mzdb/io/writer/mgf/PrecursorMzComputationEnum.html" title="enum in fr.profi.mzdb.io.writer.mgf" target="classFrame">PrecursorMzComputationEnum</a></li>
<li><a href="fr/profi/mzdb/db/table/ProcessingMethodTable.html" title="enum in fr.profi.mzdb.db.table" target="classFrame">ProcessingMethodTable</a></li>
<li><a href="io/github/msdk/alignment/ransac/RANSAC.html" title="class in io.github.msdk.alignment.ransac" target="classFrame">RANSAC</a></li>
<li><a href="io/github/msdk/alignment/ransac/RansacAlignerMethod.html" title="class in io.github.msdk.alignment.ransac" target="classFrame">RansacAlignerMethod</a></li>
<li><a href="io/github/msdk/datamodel/RawDataFile.html" title="interface in io.github.msdk.datamodel" target="classFrame"><span class="interfaceName">RawDataFile</span></a></li>
<li><a href="io/github/msdk/io/RawDataFileImportMethod.html" title="class in io.github.msdk.io" target="classFrame">RawDataFileImportMethod</a></li>
<li><a href="io/github/msdk/util/RawDataFileUtil.html" title="class in io.github.msdk.util" target="classFrame">RawDataFileUtil</a></li>
<li><a href="io/github/msdk/spectra/centroiding/RecursiveCentroidingAlgorithm.html" title="class in io.github.msdk.spectra.centroiding" target="classFrame">RecursiveCentroidingAlgorithm</a></li>
<li><a href="io/github/msdk/rawdata/filters/ResampleFilterAlgorithm.html" title="class in io.github.msdk.rawdata.filters" target="classFrame">ResampleFilterAlgorithm</a></li>
<li><a href="io/github/msdk/featuredetection/adap3d/datamodel/Result.html" title="class in io.github.msdk.featuredetection.adap3d.datamodel" target="classFrame">Result</a></li>
<li><a href="io/github/msdk/featuredetection/adap3d/datamodel/Ridgeline.html" title="class in io.github.msdk.featuredetection.adap3d.datamodel" target="classFrame">Ridgeline</a></li>
<li><a href="io/github/msdk/alignment/ransac/RTs.html" title="class in io.github.msdk.alignment.ransac" target="classFrame">RTs</a></li>
<li><a href="io/github/msdk/util/tolerances/RTTolerance.html" title="class in io.github.msdk.util.tolerances" target="classFrame">RTTolerance</a></li>
<li><a href="fr/profi/mzdb/db/model/Run.html" title="class in fr.profi.mzdb.db.model" target="classFrame">Run</a></li>
<li><a href="fr/profi/mzdb/io/reader/table/RunReader.html" title="class in fr.profi.mzdb.io.reader.table" target="classFrame">RunReader</a></li>
<li><a href="fr/profi/mzdb/model/RunSlice.html" title="class in fr.profi.mzdb.model" target="classFrame">RunSlice</a></li>
<li><a href="fr/profi/mzdb/model/RunSliceData.html" title="class in fr.profi.mzdb.model" target="classFrame">RunSliceData</a></li>
<li><a href="fr/profi/mzdb/io/reader/provider/RunSliceDataProvider.html" title="class in fr.profi.mzdb.io.reader.provider" target="classFrame">RunSliceDataProvider</a></li>
<li><a href="fr/profi/mzdb/model/RunSliceHeader.html" title="class in fr.profi.mzdb.model" target="classFrame">RunSliceHeader</a></li>
<li><a href="fr/profi/mzdb/io/reader/cache/RunSliceHeaderAsyncReader.html" title="class in fr.profi.mzdb.io.reader.cache" target="classFrame">RunSliceHeaderAsyncReader</a></li>
<li><a href="fr/profi/mzdb/io/reader/cache/RunSliceHeaderReader.html" title="class in fr.profi.mzdb.io.reader.cache" target="classFrame">RunSliceHeaderReader</a></li>
<li><a href="fr/profi/mzdb/db/table/RunSliceTable.html" title="enum in fr.profi.mzdb.db.table" target="classFrame">RunSliceTable</a></li>
<li><a href="fr/profi/mzdb/db/table/RunTable.html" title="enum in fr.profi.mzdb.db.table" target="classFrame">RunTable</a></li>
<li><a href="fr/profi/mzdb/db/model/Sample.html" title="class in fr.profi.mzdb.db.model" target="classFrame">Sample</a></li>
<li><a href="io/github/msdk/datamodel/Sample.html" title="interface in io.github.msdk.datamodel" target="classFrame"><span class="interfaceName">Sample</span></a></li>
<li><a href="fr/profi/mzdb/io/reader/table/SampleReader.html" title="class in fr.profi.mzdb.io.reader.table" target="classFrame">SampleReader</a></li>
<li><a href="fr/profi/mzdb/db/table/SampleTable.html" title="enum in fr.profi.mzdb.db.table" target="classFrame">SampleTable</a></li>
<li><a href="fr/profi/mzdb/db/model/params/ScanList.html" title="class in fr.profi.mzdb.db.model.params" target="classFrame">ScanList</a></li>
<li><a href="fr/profi/mzdb/db/model/params/ScanParamTree.html" title="class in fr.profi.mzdb.db.model.params" target="classFrame">ScanParamTree</a></li>
<li><a href="fr/profi/mzdb/db/table/ScanSettingsTable.html" title="enum in fr.profi.mzdb.db.table" target="classFrame">ScanSettingsTable</a></li>
<li><a href="fr/profi/mzdb/db/model/params/ScanWindow.html" title="class in fr.profi.mzdb.db.model.params" target="classFrame">ScanWindow</a></li>
<li><a href="fr/profi/mzdb/db/model/params/ScanWindowList.html" title="class in fr.profi.mzdb.db.model.params" target="classFrame">ScanWindowList</a></li>
<li><a href="fr/profi/mzdb/db/model/params/SelectedIon.html" title="class in fr.profi.mzdb.db.model.params" target="classFrame">SelectedIon</a></li>
<li><a href="fr/profi/mzdb/db/model/params/SelectedIonList.html" title="class in fr.profi.mzdb.db.model.params" target="classFrame">SelectedIonList</a></li>
<li><a href="io/github/msdk/datamodel/SeparationType.html" title="enum in io.github.msdk.datamodel" target="classFrame">SeparationType</a></li>
<li><a href="io/github/msdk/rawdata/filters/SGFilterAlgorithm.html" title="class in io.github.msdk.rawdata.filters" target="classFrame">SGFilterAlgorithm</a></li>
<li><a href="fr/profi/mzdb/db/table/SharedParamTreeTable.html" title="enum in fr.profi.mzdb.db.table" target="classFrame">SharedParamTreeTable</a></li>
<li><a href="io/github/msdk/featuredetection/adap3d/algorithms/SignalToNoise.html" title="class in io.github.msdk.featuredetection.adap3d.algorithms" target="classFrame">SignalToNoise</a></li>
<li><a href="io/github/msdk/datamodel/SimpleActivationInfo.html" title="class in io.github.msdk.datamodel" target="classFrame">SimpleActivationInfo</a></li>
<li><a href="io/github/msdk/datamodel/SimpleChromatogram.html" title="class in io.github.msdk.datamodel" target="classFrame">SimpleChromatogram</a></li>
<li><a href="io/github/msdk/datamodel/SimpleFeature.html" title="class in io.github.msdk.datamodel" target="classFrame">SimpleFeature</a></li>
<li><a href="io/github/msdk/datamodel/SimpleFeatureTable.html" title="class in io.github.msdk.datamodel" target="classFrame">SimpleFeatureTable</a></li>
<li><a href="io/github/msdk/datamodel/SimpleFeatureTableRow.html" title="class in io.github.msdk.datamodel" target="classFrame">SimpleFeatureTableRow</a></li>
<li><a href="io/github/msdk/datamodel/SimpleIonAnnotation.html" title="class in io.github.msdk.datamodel" target="classFrame">SimpleIonAnnotation</a></li>
<li><a href="io/github/msdk/datamodel/SimpleIonType.html" title="class in io.github.msdk.datamodel" target="classFrame">SimpleIonType</a></li>
<li><a href="io/github/msdk/datamodel/SimpleIsolationInfo.html" title="class in io.github.msdk.datamodel" target="classFrame">SimpleIsolationInfo</a></li>
<li><a href="io/github/msdk/datamodel/SimpleMsScan.html" title="class in io.github.msdk.datamodel" target="classFrame">SimpleMsScan</a></li>
<li><a href="io/github/msdk/datamodel/SimpleMsSpectrum.html" title="class in io.github.msdk.datamodel" target="classFrame">SimpleMsSpectrum</a></li>
<li><a href="io/github/msdk/datamodel/SimpleRawDataFile.html" title="class in io.github.msdk.datamodel" target="classFrame">SimpleRawDataFile</a></li>
<li><a href="io/github/msdk/datamodel/SimpleSample.html" title="class in io.github.msdk.datamodel" target="classFrame">SimpleSample</a></li>
<li><a href="io/github/msdk/id/sirius/SiriusIdentificationMethod.html" title="class in io.github.msdk.id.sirius" target="classFrame">SiriusIdentificationMethod</a></li>
<li><a href="io/github/msdk/id/sirius/SiriusIonAnnotation.html" title="class in io.github.msdk.id.sirius" target="classFrame">SiriusIonAnnotation</a></li>
<li><a href="io/github/msdk/featuredetection/adap3d/algorithms/SliceSparseMatrix.html" title="class in io.github.msdk.featuredetection.adap3d.algorithms" target="classFrame">SliceSparseMatrix</a></li>
<li><a href="io/github/msdk/featuredetection/adap3d/algorithms/SliceSparseMatrix.Triplet.html" title="class in io.github.msdk.featuredetection.adap3d.algorithms" target="classFrame">SliceSparseMatrix.Triplet</a></li>
<li><a href="io/github/msdk/featuredetection/adap3d/algorithms/SliceSparseMatrix.VerticalSliceDataPoint.html" title="class in io.github.msdk.featuredetection.adap3d.algorithms" target="classFrame">SliceSparseMatrix.VerticalSliceDataPoint</a></li>
<li><a href="fr/profi/mzdb/db/model/Software.html" title="class in fr.profi.mzdb.db.model" target="classFrame">Software</a></li>
<li><a href="fr/profi/mzdb/io/reader/table/SoftwareReader.html" title="class in fr.profi.mzdb.io.reader.table" target="classFrame">SoftwareReader</a></li>
<li><a href="fr/profi/mzdb/db/table/SoftwareTable.html" title="enum in fr.profi.mzdb.db.table" target="classFrame">SoftwareTable</a></li>
<li><a href="io/github/msdk/featuredetection/adap3d/algorithms/SortAndKeepOriginalIndecies.html" title="class in io.github.msdk.featuredetection.adap3d.algorithms" target="classFrame">SortAndKeepOriginalIndecies</a></li>
<li><a href="fr/profi/mzdb/db/model/params/SourceComponent.html" title="class in fr.profi.mzdb.db.model.params" target="classFrame">SourceComponent</a></li>
<li><a href="fr/profi/mzdb/db/model/SourceFile.html" title="class in fr.profi.mzdb.db.model" target="classFrame">SourceFile</a></li>
<li><a href="fr/profi/mzdb/io/reader/table/SourceFileReader.html" title="class in fr.profi.mzdb.io.reader.table" target="classFrame">SourceFileReader</a></li>
<li><a href="fr/profi/mzdb/db/table/SourceFileScanSettingsMapTable.html" title="enum in fr.profi.mzdb.db.table" target="classFrame">SourceFileScanSettingsMapTable</a></li>
<li><a href="fr/profi/mzdb/db/table/SourceFileTable.html" title="enum in fr.profi.mzdb.db.table" target="classFrame">SourceFileTable</a></li>
<li><a href="fr/profi/mzdb/model/Spectrum.html" title="class in fr.profi.mzdb.model" target="classFrame">Spectrum</a></li>
<li><a href="fr/profi/mzdb/model/SpectrumData.html" title="class in fr.profi.mzdb.model" target="classFrame">SpectrumData</a></li>
<li><a href="fr/profi/mzdb/model/SpectrumHeader.html" title="class in fr.profi.mzdb.model" target="classFrame">SpectrumHeader</a></li>
<li><a href="fr/profi/mzdb/io/reader/cache/SpectrumHeaderAsyncReader.html" title="class in fr.profi.mzdb.io.reader.cache" target="classFrame">SpectrumHeaderAsyncReader</a></li>
<li><a href="fr/profi/mzdb/io/reader/cache/SpectrumHeaderReader.html" title="class in fr.profi.mzdb.io.reader.cache" target="classFrame">SpectrumHeaderReader</a></li>
<li><a href="fr/profi/mzdb/io/reader/iterator/SpectrumIterator.html" title="class in fr.profi.mzdb.io.reader.iterator" target="classFrame">SpectrumIterator</a></li>
<li><a href="fr/profi/mzdb/io/reader/iterator/SpectrumRangeIterator.html" title="class in fr.profi.mzdb.io.reader.iterator" target="classFrame">SpectrumRangeIterator</a></li>
<li><a href="fr/profi/mzdb/model/SpectrumSlice.html" title="class in fr.profi.mzdb.model" target="classFrame">SpectrumSlice</a></li>
<li><a href="fr/profi/mzdb/db/table/SpectrumTable.html" title="enum in fr.profi.mzdb.db.table" target="classFrame">SpectrumTable</a></li>
<li><a href="io/github/msdk/spectra/centroidprofiledetection/SpectrumTypeDetectionAlgorithm.html" title="class in io.github.msdk.spectra.centroidprofiledetection" target="classFrame">SpectrumTypeDetectionAlgorithm</a></li>
<li><a href="io/github/msdk/spectra/splash/SplashCalculationAlgorithm.html" title="class in io.github.msdk.spectra.splash" target="classFrame">SplashCalculationAlgorithm</a></li>
<li><a href="fr/profi/mzdb/io/reader/bb/SQLiteBlobReader.html" title="class in fr.profi.mzdb.io.reader.bb" target="classFrame">SQLiteBlobReader</a></li>
<li><a href="fr/profi/mzdb/util/sqlite/SQLiteJobWrapper.html" title="class in fr.profi.mzdb.util.sqlite" target="classFrame">SQLiteJobWrapper</a></li>
<li><a href="fr/profi/mzdb/util/sqlite/SQLiteObservableJob.html" title="class in fr.profi.mzdb.util.sqlite" target="classFrame">SQLiteObservableJob</a></li>
<li><a href="fr/profi/mzdb/util/sqlite/SQLiteObservableRecord.html" title="class in fr.profi.mzdb.util.sqlite" target="classFrame">SQLiteObservableRecord</a></li>
<li><a href="fr/profi/mzdb/util/sqlite/SQLiteQuery.html" title="class in fr.profi.mzdb.util.sqlite" target="classFrame">SQLiteQuery</a></li>
<li><a href="fr/profi/mzdb/util/sqlite/SQLiteRecord.html" title="class in fr.profi.mzdb.util.sqlite" target="classFrame">SQLiteRecord</a></li>
<li><a href="fr/profi/mzdb/util/sqlite/SQLiteRecordIterator.html" title="class in fr.profi.mzdb.util.sqlite" target="classFrame">SQLiteRecordIterator</a></li>
<li><a href="fr/profi/mzdb/util/sqlite/SQLiteResultDescriptor.html" title="class in fr.profi.mzdb.util.sqlite" target="classFrame">SQLiteResultDescriptor</a></li>
<li><a href="io/github/msdk/featuredetection/srm/SrmDetectionMethod.html" title="class in io.github.msdk.featuredetection.srm" target="classFrame">SrmDetectionMethod</a></li>
<li><a href="fr/profi/mzdb/io/reader/bb/StreamReader.html" title="class in fr.profi.mzdb.io.reader.bb" target="classFrame">StreamReader</a></li>
<li><a href="fr/profi/mzdb/db/table/TableParamTreeSchemaTable.html" title="enum in fr.profi.mzdb.db.table" target="classFrame">TableParamTreeSchemaTable</a></li>
<li><a href="io/github/msdk/io/chromatof/TableRow.html" title="class in io.github.msdk.io.chromatof" target="classFrame">TableRow</a></li>
<li><a href="io/github/msdk/io/mzml/util/TagTracker.html" title="class in io.github.msdk.io.mzml.util" target="classFrame">TagTracker</a></li>
<li><a href="io/github/msdk/featuredetection/targeted/TargetedDetectionMethod.html" title="class in io.github.msdk.featuredetection.targeted" target="classFrame">TargetedDetectionMethod</a></li>
<li><a href="fr/profi/mzdb/db/model/params/thermo/ThermoFragmentationTarget.html" title="class in fr.profi.mzdb.db.model.params.thermo" target="classFrame">ThermoFragmentationTarget</a></li>
<li><a href="io/github/msdk/io/nativeformats/ThermoRawImportMethod.html" title="class in io.github.msdk.io.nativeformats" target="classFrame">ThermoRawImportMethod</a></li>
<li><a href="fr/profi/mzdb/db/model/params/thermo/ThermoScanMetaData.html" title="class in fr.profi.mzdb.db.model.params.thermo" target="classFrame">ThermoScanMetaData</a></li>
<li><a href="io/github/msdk/io/txt/TxtExportAlgorithm.html" title="class in io.github.msdk.io.txt" target="classFrame">TxtExportAlgorithm</a></li>
<li><a href="io/github/msdk/io/txt/TxtImportAlgorithm.html" title="class in io.github.msdk.io.txt" target="classFrame">TxtImportAlgorithm</a></li>
<li><a href="fr/profi/mzdb/db/model/params/param/UserParam.html" title="class in fr.profi.mzdb.db.model.params.param" target="classFrame">UserParam</a></li>
<li><a href="fr/profi/mzdb/db/model/params/param/UserText.html" title="class in fr.profi.mzdb.db.model.params.param" target="classFrame">UserText</a></li>
<li><a href="io/github/msdk/io/nativeformats/WatersRawImportMethod.html" title="class in io.github.msdk.io.nativeformats" target="classFrame">WatersRawImportMethod</a></li>
<li><a href="io/github/msdk/spectra/centroiding/WaveletCentroidingAlgorithm.html" title="class in io.github.msdk.spectra.centroiding" target="classFrame">WaveletCentroidingAlgorithm</a></li>
<li><a href="fr/profi/mzdb/util/jaxb/XercesSAXParser.html" title="class in fr.profi.mzdb.util.jaxb" target="classFrame">XercesSAXParser</a></li>
<li><a href="fr/profi/mzdb/XicMethod.html" title="enum in fr.profi.mzdb" target="classFrame">XicMethod</a></li>
<li><a href="io/github/msdk/io/mzxml/ZlibCompressionUtil.html" title="class in io.github.msdk.io.mzxml" target="classFrame">ZlibCompressionUtil</a></li>
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