issues Search Results · repo:ncbi/vadr language:Perl
Filter by
81 results
(92 ms)81 results
inncbi/vadr (press backspace or delete to remove)I noticed that the fasta trimming perl script has a lot of commented-out lines suggesting that you had experimented with
this additional behavior at one point.
I recently discovered that NCBI s new table2asn ...
dpark01
- 3
- Opened on Jan 24
- #91
Hello, Thank you again for vadr tool.
I created a Porcine Circo Virus databank with types 1, 2, 3 and 4 to do vadr annotations. Vadr is working fine, but I
don t get any gene mention, even when I use ...
FTouzain
- 2
- Opened on Jan 16
- #90
Thank you for your work.
When I run vadr 1.6.3 on this virus: https://www.ncbi.nlm.nih.gov/nuccore/KY933089 (fasta file)
I obtain nothing in the pass tsv file. In the fail tsv file, I get this:
Feature ...
- 6
- Opened on Nov 20, 2024
- #89
If an alternative_ftr_set_subn value contains whitespace it won t work properly because the code that processes those
values looks for this regular expression:
vadr.pm::vdr_FeatureInfoValidateAndConvertAlternativeFeatureSetSubstitution() ...
nawrockie
- Opened on Sep 24, 2024
- #88
Hello,
I m not sure if it s appropriate to post this issue here since it s an issue with the VADR Biocontainer image created
from the Bioconda recipe. This issue only arises when running VADR using the ...
peterk87
- 1
- Opened on Sep 20, 2024
- #87
If a CDS has multiple protein sequences in its blastx library, and some of those are longer than the reference length
for the CDS, then it is possible to have an early stop in the blastx output occur at ...
- 2
- Opened on Aug 9, 2024
- #84
In rare cases, if an alignment begins in the middle of a CDS and starts with an insert, the code that checks for
frameshifts does not properly deal with the insert and this leads to the program exiting ...
- 1
- Opened on Jul 11, 2024
- #83
Hello,
Thank you very much for your ongoing development of VADR. I love it!
I recently installed via Conda the latest release of VADR (v 1.6.4), and encountered an issue attempting to download
additional ...
Codes1985
- 2
- Opened on Jul 5, 2024
- #82
Hello,
I m having issues in downstream pipelines (cecret) caused by extra header lines being added to the .vadr.sqa files. Is
this the expected behavor for vadr?
I m seeing the same behavior in VADR ...
garfinjm
- 2
- Opened on Jun 27, 2024
- #81
v-build.pl NC_001474 test fails with:
ERROR in vdr_EutilsFetchToFile, problem fetching NC_001474 (undefined)
Even when computer is online. This is similar to https://github.com/ncbi/vadr/issues/62 but ...
- 1
- Opened on Jun 26, 2024
- #80
Learn how you can use GitHub Issues to plan and track your work.
Save views for sprints, backlogs, teams, or releases. Rank, sort, and filter issues to suit the occasion. The possibilities are endless.Learn more about GitHub IssuesProTip!
Restrict your search to the title by using the in:title qualifier.Learn how you can use GitHub Issues to plan and track your work.
Save views for sprints, backlogs, teams, or releases. Rank, sort, and filter issues to suit the occasion. The possibilities are endless.Learn more about GitHub IssuesProTip!
Restrict your search to the title by using the in:title qualifier.