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1 parent 9bcf801 commit 7bd02fdCopy full SHA for 7bd02fd
modules/nf-lineage/src/main/nextflow/lineage/LinObserver.groovy
@@ -465,10 +465,11 @@ class LinObserver implements TraceObserverV2 {
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private List<Object> manageFileInParam(List<FileHolder> files, PathNormalizer normalizer){
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final paths = new LinkedList<Object>();
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for( FileHolder it : files ) {
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- final ref = getSourceReference(it.storePath)
+ final path = it.sourcePath ?: it.storePath
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+ final ref = getSourceReference(path)
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paths.add(ref ?: new DataPath(
- normalizer.normalizePath(it.storePath),
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- Checksum.ofNextflow(it.storePath))
+ normalizer.normalizePath(path),
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+ Checksum.ofNextflow(path))
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)
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}
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return paths
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