You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
To reproduce, clone the nf-prov repository and run the test pipeline with nf-prov 1.4.0:
nextflow run nf-prov-test
It fails with the following error:
java.lang.NullPointerException: Cannot invoke "nextflow.processor.TaskRun.getWorkDir()" because "task" is null
at nextflow.prov.WrrocRenderer.getTaskOutputName(WrrocRenderer.groovy:916)
at nextflow.prov.WrrocRenderer.access$10(WrrocRenderer.groovy)
at nextflow.prov.WrrocRenderer$_render_closure25.doCall(WrrocRenderer.groovy:459)
...
at nextflow.prov.WrrocRenderer.render(WrrocRenderer.groovy:456)
at nextflow.prov.ProvObserver.onFlowComplete(ProvObserver.groovy:123)
at nextflow.Session.notifyFlowComplete(Session.groovy:1155)
at nextflow.Session.shutdown0(Session.groovy:749)
at nextflow.Session.destroy(Session.groovy:694)
at nextflow.script.ScriptRunner.shutdown(ScriptRunner.groovy:260)
at nextflow.script.ScriptRunner.execute(ScriptRunner.groovy:146)
at nextflow.cli.CmdRun.run(CmdRun.groovy:376)
at nextflow.cli.Launcher.run(Launcher.groovy:503)
at nextflow.cli.Launcher.main(Launcher.groovy:658)
On a resumed run, the wrroc manifest is created successfully. So that is a workaround for now.
@fbartusch this looks like the same error you encountered with nf-core/demultiplex 1.5.1
Fortunately now that I'm seeing it with the test pipeline, it should be easy to debug and fix.
The text was updated successfully, but these errors were encountered:
To reproduce, clone the nf-prov repository and run the test pipeline with nf-prov 1.4.0:
It fails with the following error:
On a resumed run, the wrroc manifest is created successfully. So that is a workaround for now.
@fbartusch this looks like the same error you encountered with nf-core/demultiplex 1.5.1
Fortunately now that I'm seeing it with the test pipeline, it should be easy to debug and fix.
The text was updated successfully, but these errors were encountered: