Update umitools/extract

[slebedeva]

Description of the bug

Test run fails with yaml.parser.ParserError:

  expected <block end>, but found '<scalar>'
    in "versions.yml", line 65, column 2

Steps to reproduce

Steps to reproduce the behaviour:

1. Command line: nextflow run $PWD/main.nf --input $PWD/tests/test_new_samplesheet_FASTQ.csv -output-dir $PWD/results_test -profile test,singularity -c $PWD/local.config "$@" &&
2. See error: process > NFCORE_CLIPSEQ:CLIPSEQ:DUMP_SOFTWARE_VERSIONS (1) [100%] 1 of 1, failed: 1 ✘

Expected behaviour

Pipeline test run completed successfully.

Log files

Have you provided the following extra information/files:

• [X ] The command used to run the pipeline
• The .nextflow.log file

System

• Hardware: HPC
• Executor: slurm
• OS: CentOS Linux
• Version 7

Nextflow Installation

• Version: 24.10.4.5934

Container engine

• Engine: Singularity (Apptainer)
• version: 1.1.2-1.el7
• Image tag: nfcore/clipseq:1.0.0 at feat-2-0

Additional context

This is related to the following issue in nf-core/rnaseq: nf-core/rnaseq#1103. In theory it should be resolved by updating the umitools/extract module.