jex.config

params {
    config_profile_name        = 'Jex'
    config_profile_description = 'Nextflow config file for the MRC LMS Jex cluster'
    config_profile_contact     = 'George Young (@A-N-Other)'
    config_profile_url         = 'https://lms.mrc.ac.uk/research-facility/bioinformatics-facility/'
}

process {
    resourceLimits = [
        memory: 4000.GB,
        cpus: 16,
        time: 3.d
    ]
    executor       = 'slurm'
    queue          = {
        if (task.time <= 6.h && task.cpus <= 8 && task.memory <= 64.GB) {
            'nice'
        }
        else if (task.memory > 256.GB) {
            'hmem'
        }
        else {
            'cpu'
        }
    }
    clusterOptions = '--qos qos_batch'
}

singularity {
    enabled    = true
    autoMounts = true
    cacheDir   = '/opt/resources/apps/singularity/cache'
}

params {
    max_memory = 4000.GB
    max_cpus   = 16
    max_time   = 3.d
}