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[automated] Update container configs
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conf/containers/containers_docker_arm64.config

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -27,9 +27,9 @@ process { withName: 'PICARD_MARKDUPLICATES' { container = 'community.wave.seqera
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process { withName: 'PREPROCESS_TRANSCRIPTS_FASTA_GENCODE' { container = 'community.wave.seqera.io/library/sed:4.7--c9d1b71422302845' } }
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process { withName: 'PRESEQ_LCEXTRAP' { container = 'community.wave.seqera.io/library/preseq:3.2.0--2789d8b704b33613' } }
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process { withName: 'QUALIMAP_RNASEQ' { container = 'community.wave.seqera.io/library/qualimap:2.3--c1797c2253925b3a' } }
30-
process { withName: 'RSEM_CALCULATEEXPRESSION' { container = 'community.wave.seqera.io/library/rsem_star:5f8b7771e0edff1d' } }
30+
process { withName: 'RSEM_CALCULATEEXPRESSION' { container = 'community.wave.seqera.io/library/rsem_star:5acb4e8c03239c32' } }
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process { withName: 'RSEM_MERGE_COUNTS' { container = 'community.wave.seqera.io/library/sed:4.7--c9d1b71422302845' } }
32-
process { withName: 'RSEM_PREPAREREFERENCE' { container = 'community.wave.seqera.io/library/rsem_star:5f8b7771e0edff1d' } }
32+
process { withName: 'RSEM_PREPAREREFERENCE' { container = 'community.wave.seqera.io/library/rsem_star:5acb4e8c03239c32' } }
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process { withName: 'RSEQC_BAMSTAT' { container = 'community.wave.seqera.io/library/rseqc_r-base:2c6374f25c7b060e' } }
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process { withName: 'RSEQC_INFEREXPERIMENT' { container = 'community.wave.seqera.io/library/rseqc_r-base:2c6374f25c7b060e' } }
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process { withName: 'RSEQC_INNERDISTANCE' { container = 'community.wave.seqera.io/library/rseqc_r-base:2c6374f25c7b060e' } }
@@ -49,7 +49,7 @@ process { withName: 'SORTMERNA' { container = 'community.wave.seqera.io/library/
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process { withName: 'STAR_ALIGN' { container = 'community.wave.seqera.io/library/htslib_samtools_star_gawk:311d422a50e6d829' } }
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process { withName: 'STAR_ALIGN_IGENOMES' { container = 'community.wave.seqera.io/library/star_samtools_gawk:bef5708b1c54889a' } }
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process { withName: 'STAR_GENOMEGENERATE' { container = 'community.wave.seqera.io/library/htslib_samtools_star_gawk:311d422a50e6d829' } }
52-
process { withName: 'STAR_GENOMEGENERATE_IGENOMES' { container = 'community.wave.seqera.io/library/star_samtools_gawk:342c22574b6bb80b' } }
52+
process { withName: 'STAR_GENOMEGENERATE_IGENOMES' { container = 'community.wave.seqera.io/library/star_samtools_gawk:bef5708b1c54889a' } }
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process { withName: 'STRINGTIE_STRINGTIE' { container = 'community.wave.seqera.io/library/stringtie:2.2.3--3c30041821e5a79a' } }
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process { withName: 'SUBREAD_FEATURECOUNTS' { container = 'community.wave.seqera.io/library/subread:2.0.6--1968a7457b0ed34e' } }
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process { withName: 'SUMMARIZEDEXPERIMENT_SUMMARIZEDEXPERIMENT' { container = 'community.wave.seqera.io/library/bioconductor-summarizedexperiment:1.32.0--13051b66560c2065' } }

conf/containers/containers_singularity_arm64.config

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -27,9 +27,9 @@ process { withName: 'PICARD_MARKDUPLICATES' { container = 'docker://community.wa
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process { withName: 'PREPROCESS_TRANSCRIPTS_FASTA_GENCODE' { container = 'docker://community.wave.seqera.io/library/sed:4.7--c9d1b71422302845' } }
2828
process { withName: 'PRESEQ_LCEXTRAP' { container = 'docker://community.wave.seqera.io/library/preseq:3.2.0--2789d8b704b33613' } }
2929
process { withName: 'QUALIMAP_RNASEQ' { container = 'docker://community.wave.seqera.io/library/qualimap:2.3--c1797c2253925b3a' } }
30-
process { withName: 'RSEM_CALCULATEEXPRESSION' { container = 'docker://community.wave.seqera.io/library/rsem_star:5f8b7771e0edff1d' } }
30+
process { withName: 'RSEM_CALCULATEEXPRESSION' { container = 'docker://community.wave.seqera.io/library/rsem_star:5acb4e8c03239c32' } }
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process { withName: 'RSEM_MERGE_COUNTS' { container = 'docker://community.wave.seqera.io/library/sed:4.7--c9d1b71422302845' } }
32-
process { withName: 'RSEM_PREPAREREFERENCE' { container = 'docker://community.wave.seqera.io/library/rsem_star:5f8b7771e0edff1d' } }
32+
process { withName: 'RSEM_PREPAREREFERENCE' { container = 'docker://community.wave.seqera.io/library/rsem_star:5acb4e8c03239c32' } }
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process { withName: 'RSEQC_BAMSTAT' { container = 'docker://community.wave.seqera.io/library/rseqc_r-base:2c6374f25c7b060e' } }
3434
process { withName: 'RSEQC_INFEREXPERIMENT' { container = 'docker://community.wave.seqera.io/library/rseqc_r-base:2c6374f25c7b060e' } }
3535
process { withName: 'RSEQC_INNERDISTANCE' { container = 'docker://community.wave.seqera.io/library/rseqc_r-base:2c6374f25c7b060e' } }
@@ -49,7 +49,7 @@ process { withName: 'SORTMERNA' { container = 'docker://community.wave.seqera.io
4949
process { withName: 'STAR_ALIGN' { container = 'docker://community.wave.seqera.io/library/htslib_samtools_star_gawk:311d422a50e6d829' } }
5050
process { withName: 'STAR_ALIGN_IGENOMES' { container = 'docker://community.wave.seqera.io/library/star_samtools_gawk:bef5708b1c54889a' } }
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process { withName: 'STAR_GENOMEGENERATE' { container = 'docker://community.wave.seqera.io/library/htslib_samtools_star_gawk:311d422a50e6d829' } }
52-
process { withName: 'STAR_GENOMEGENERATE_IGENOMES' { container = 'docker://community.wave.seqera.io/library/star_samtools_gawk:342c22574b6bb80b' } }
52+
process { withName: 'STAR_GENOMEGENERATE_IGENOMES' { container = 'docker://community.wave.seqera.io/library/star_samtools_gawk:bef5708b1c54889a' } }
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process { withName: 'STRINGTIE_STRINGTIE' { container = 'docker://community.wave.seqera.io/library/stringtie:2.2.3--3c30041821e5a79a' } }
5454
process { withName: 'SUBREAD_FEATURECOUNTS' { container = 'docker://community.wave.seqera.io/library/subread:2.0.6--1968a7457b0ed34e' } }
5555
process { withName: 'SUMMARIZEDEXPERIMENT_SUMMARIZEDEXPERIMENT' { container = 'docker://community.wave.seqera.io/library/bioconductor-summarizedexperiment:1.32.0--13051b66560c2065' } }

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