STY: black

Author: effigies

nipype/algorithms/confounds.py

@@ -577,7 +577,7 @@ class CompCor(SimpleInterface):
     ]
 
     def __init__(self, *args, **kwargs):
-        """ exactly the same as compcor except the header """
+        """exactly the same as compcor except the header"""
         super(CompCor, self).__init__(*args, **kwargs)
         self._header = "CompCor"
 
@@ -774,7 +774,7 @@ class ACompCor(CompCor):
     """
 
     def __init__(self, *args, **kwargs):
-        """ exactly the same as compcor except the header """
+        """exactly the same as compcor except the header"""
         super(ACompCor, self).__init__(*args, **kwargs)
         self._header = "aCompCor"
 
@@ -825,7 +825,7 @@ class TCompCor(CompCor):
     output_spec = TCompCorOutputSpec
 
     def __init__(self, *args, **kwargs):
-        """ exactly the same as compcor except the header """
+        """exactly the same as compcor except the header"""
         super(TCompCor, self).__init__(*args, **kwargs)
         self._header = "tCompCor"
         self._mask_files = []

nipype/algorithms/mesh.py

@@ -23,7 +23,7 @@
 
 
 class TVTKBaseInterface(BaseInterface):
-    """ A base class for interfaces using VTK """
+    """A base class for interfaces using VTK"""
 
     _redirect_x = True
 

nipype/algorithms/modelgen.py

@@ -516,7 +516,7 @@ def _generate_design(self, infolist=None):
         )
 
     def _run_interface(self, runtime):
-        """"""
+        """ """
         self._sessioninfo = None
         self._generate_design()
         return runtime

nipype/algorithms/tests/test_CompCor.py

@@ -11,7 +11,7 @@
 
 
 class TestCompCor:
-    """ Note: Tests currently do a poor job of testing functionality """
+    """Note: Tests currently do a poor job of testing functionality"""
 
     filenames = {
         "functionalnii": "compcorfunc.nii",

nipype/algorithms/tests/test_TSNR.py

@@ -14,7 +14,7 @@
 
 
 class TestTSNR:
-    """ Note: Tests currently do a poor job of testing functionality """
+    """Note: Tests currently do a poor job of testing functionality"""
 
     in_filenames = {"in_file": "tsnrinfile.nii"}
 

nipype/external/cloghandler.py

@@ -222,7 +222,7 @@ def flush(self):
         pass
 
     def _degrade(self, degrade, msg, *args):
-        """ Set degrade mode or not.  Ignore msg. """
+        """Set degrade mode or not.  Ignore msg."""
         self._rotateFailed = degrade
         del msg, args  # avoid pychecker warnings
 

nipype/interfaces/base/core.py

@@ -87,12 +87,12 @@ def version(self):
 
     @classmethod
     def _outputs(cls):
-        """ Initializes outputs"""
+        """Initializes outputs"""
         raise NotImplementedError
 
     @classmethod
     def help(cls, returnhelp=False):
-        """ Prints class help """
+        """Prints class help"""
         allhelp = format_help(cls)
         if returnhelp:
             return allhelp
@@ -112,7 +112,7 @@ def aggregate_outputs(self, runtime=None, needed_outputs=None):
         raise NotImplementedError
 
     def _list_outputs(self):
-        """ List expected outputs"""
+        """List expected outputs"""
         raise NotImplementedError
 
     @classmethod

nipype/interfaces/base/specs.py

@@ -58,7 +58,7 @@ class BaseTraitedSpec(traits.HasTraits):
     package_version = nipype_version
 
     def __init__(self, **kwargs):
-        """ Initialize handlers and inputs"""
+        """Initialize handlers and inputs"""
         # NOTE: In python 2.6, object.__init__ no longer accepts input
         # arguments.  HasTraits does not define an __init__ and
         # therefore these args were being ignored.
@@ -79,7 +79,7 @@ def items(self):
             yield name, self.traits()[name]
 
     def __repr__(self):
-        """ Return a well-formatted representation of the traits """
+        """Return a well-formatted representation of the traits"""
         outstr = []
         for name, value in sorted(self.trait_get().items()):
             outstr.append("%s = %s" % (name, value))

nipype/interfaces/cmtk/cmtk.py

@@ -190,7 +190,7 @@ def cmat(
     endpoint_name,
     intersections=False,
 ):
-    """ Create the connection matrix for each resolution using fibers and ROIs. """
+    """Create the connection matrix for each resolution using fibers and ROIs."""
     import scipy.io as sio
 
     stats = {}
@@ -460,7 +460,7 @@ def cmat(
 
 
 def save_fibers(oldhdr, oldfib, fname, indices):
-    """ Stores a new trackvis file fname using only given indices """
+    """Stores a new trackvis file fname using only given indices"""
     hdrnew = oldhdr.copy()
     outstreams = []
     for i in indices:

nipype/interfaces/dipy/base.py

@@ -27,13 +27,13 @@
 
 
 def no_dipy():
-    """ Check if dipy is available """
+    """Check if dipy is available"""
     global HAVE_DIPY
     return not HAVE_DIPY
 
 
 def dipy_version():
-    """ Check dipy version """
+    """Check dipy version"""
     if no_dipy():
         return None