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Don't fully delete output directories #2637

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Run time

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Job	Run time
test (3.9, ubuntu-latest)	1m 3s
test (3.9, macos-latest)	1m 0s
test (3.9, windows-latest)	1m 26s
test_min_deps (ubuntu-latest)	41s
test (3.10, ubuntu-latest)	1m 11s
test_min_deps (macos-latest)	46s
Integration Tests (0.20.0)	34s
test (3.10, macos-latest)	56s
test_min_deps (windows-latest)	1m 41s
Integration Tests	36s
test (3.10, windows-latest)	1m 25s
test (3.11, ubuntu-latest)	59s
test (3.11, macos-latest)	43s
test (3.11, windows-latest)	1m 20s
test (3.12, ubuntu-latest)	1m 12s
test (3.12, macos-latest)	42s
test (3.12, windows-latest)	1m 33s
test (3.13, ubuntu-latest)	1m 17s
test (3.13, macos-latest)	42s
test (3.13, windows-latest)	2m 8s
Combine & check coverage	9s
	22m 4s