From 7885cdced9049175e24aa00fd61604bcd4bcf150 Mon Sep 17 00:00:00 2001
From: Robin De Schepper <robin.deschepper93@gmail.com>
Date: Thu, 4 Dec 2025 13:48:29 +0100
Subject: [PATCH 1/2] Added __all__ attribute to clarify re-export intentions

closes #31
---
 morphio/__init__.py | 105 ++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 105 insertions(+)

diff --git a/morphio/__init__.py b/morphio/__init__.py
index 53a3fe6b..3f6a2d04 100644
--- a/morphio/__init__.py
+++ b/morphio/__init__.py
@@ -56,3 +56,108 @@
     vasculature,
     version,
 )
+
+import platform
+
+
+if platform.system() == "Windows":
+    # the plan is to leverage the h5py inclusion of hdf5 dll; this way
+    # there cannot be a mismatch between version, when using windows,
+    # and MorphIO doesn't need to build hdf5
+    import h5py as _h5py
+    if (1, 14) != _h5py.version.hdf5_version_tuple[:2]:
+        raise RuntimeError(f'HDF5 library version mismatch. 1.14.x != {_h5py.version.hdf5_version}')
+    del _h5py
+
+
+from ._morphio import (
+    Annotation,
+    AnnotationType,
+    CellFamily,
+    CellLevel,
+    Collection,
+    DendriticSpine,
+    EndoplasmicReticulum,
+    GlialCell,
+    IDSequenceError,
+    IterType,
+    LogLevel,
+    MissingParentError,
+    MitoSection,
+    Mitochondria,
+    MitochondriaPointLevel,
+    MorphioError,
+    Morphology,
+    MultipleTrees,
+    Option,
+    PointLevel,
+    Points,
+    PostSynapticDensity,
+    Properties,
+    RawDataError,
+    Section,
+    SectionBuilderError,
+    SectionLevel,
+    SectionType,
+    Soma,
+    SomaError,
+    SomaType,
+    UnknownFileType,
+    VasculatureSectionType,
+    Warning,
+    WarningHandlerCollector,
+    WriterError,
+    mut,
+    ostream_redirect,
+    set_ignored_warning,
+    set_raise_warnings,
+    set_maximum_warnings,
+    vasculature,
+    version,
+)
+
+__all__ = [
+    "Annotation",
+    "AnnotationType",
+    "CellFamily",
+    "CellLevel",
+    "Collection",
+    "DendriticSpine",
+    "EndoplasmicReticulum",
+    "GlialCell",
+    "IDSequenceError",
+    "IterType",
+    "LogLevel",
+    "MissingParentError",
+    "MitoSection",
+    "Mitochondria",
+    "MitochondriaPointLevel",
+    "MorphioError",
+    "Morphology",
+    "MultipleTrees",
+    "Option",
+    "PointLevel",
+    "Points",
+    "PostSynapticDensity",
+    "Properties",
+    "RawDataError",
+    "Section",
+    "SectionBuilderError",
+    "SectionLevel",
+    "SectionType",
+    "Soma",
+    "SomaError",
+    "SomaType",
+    "UnknownFileType",
+    "VasculatureSectionType",
+    "Warning",
+    "WarningHandlerCollector",
+    "WriterError",
+    "mut",
+    "ostream_redirect",
+    "set_ignored_warning",
+    "set_raise_warnings",
+    "set_maximum_warnings",
+    "vasculature",
+    "version",
+]

From 2e357ed81a799307600a2d6bb83f37fd457b634d Mon Sep 17 00:00:00 2001
From: Robin De Schepper <robin.deschepper93@gmail.com>
Date: Thu, 4 Dec 2025 20:53:47 +0100
Subject: [PATCH 2/2] Removed duplication

---
 morphio/__init__.py | 59 ---------------------------------------------
 1 file changed, 59 deletions(-)

diff --git a/morphio/__init__.py b/morphio/__init__.py
index 3f6a2d04..a7af3bd3 100644
--- a/morphio/__init__.py
+++ b/morphio/__init__.py
@@ -1,65 +1,6 @@
 import platform
 
 
-if platform.system() == "Windows":
-    # the plan is to leverage the h5py inclusion of hdf5 dll; this way
-    # there cannot be a mismatch between version, when using windows,
-    # and MorphIO doesn't need to build hdf5
-    import h5py as _h5py
-    if (1, 14) != _h5py.version.hdf5_version_tuple[:2]:
-        raise RuntimeError(f'HDF5 library version mismatch. 1.14.x != {_h5py.version.hdf5_version}')
-    del _h5py
-
-
-from ._morphio import (
-    Annotation,
-    AnnotationType,
-    CellFamily,
-    CellLevel,
-    Collection,
-    DendriticSpine,
-    EndoplasmicReticulum,
-    GlialCell,
-    IDSequenceError,
-    IterType,
-    LogLevel,
-    MissingParentError,
-    MitoSection,
-    Mitochondria,
-    MitochondriaPointLevel,
-    MorphioError,
-    Morphology,
-    MultipleTrees,
-    Option,
-    PointLevel,
-    Points,
-    PostSynapticDensity,
-    Properties,
-    RawDataError,
-    Section,
-    SectionBuilderError,
-    SectionLevel,
-    SectionType,
-    Soma,
-    SomaError,
-    SomaType,
-    UnknownFileType,
-    VasculatureSectionType,
-    Warning,
-    WarningHandlerCollector,
-    WriterError,
-    mut,
-    ostream_redirect,
-    set_ignored_warning,
-    set_raise_warnings,
-    set_maximum_warnings,
-    vasculature,
-    version,
-)
-
-import platform
-
-
 if platform.system() == "Windows":
     # the plan is to leverage the h5py inclusion of hdf5 dll; this way
     # there cannot be a mismatch between version, when using windows,