diff --git a/.gitignore b/.gitignore
index 1e4ed8c..394d569 100644
--- a/.gitignore
+++ b/.gitignore
@@ -28,3 +28,7 @@ arm64
/NeuroML2/Sim_Fig4C_AWCon.json
/NeuroML2/Fig7B_RMD.json
/NeuroML2/Sim_Fig7B_RMD.json
+/NeuroML2/.DS_Store
+/NeuroML2/*.hoc
+/NeuroML2/*.mod
+/NeuroML2/*_nrn.py
diff --git a/NeuroML2/AWCon_bk.channel.nml b/NeuroML2/AWCon_bk.channel.nml
index 7d83fa5..fd53096 100644
--- a/NeuroML2/AWCon_bk.channel.nml
+++ b/NeuroML2/AWCon_bk.channel.nml
@@ -19,6 +19,12 @@
+
+
+
+
+
+
@@ -35,12 +41,6 @@
-
-
-
-
-
-
@@ -79,6 +79,12 @@
+
+
+
+
+
+
@@ -95,12 +101,6 @@
-
-
-
-
-
-
@@ -137,6 +137,12 @@
+
+
+
+
+
+
@@ -153,12 +159,6 @@
-
-
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-
@@ -191,6 +191,12 @@
+
+
+
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+
+
@@ -207,12 +213,6 @@
-
-
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-
-
-
diff --git a/NeuroML2/Fig4C_AWCon.net.nml b/NeuroML2/Fig4C_AWCon.net.nml
index b3000e8..d5eacdd 100644
--- a/NeuroML2/Fig4C_AWCon.net.nml
+++ b/NeuroML2/Fig4C_AWCon.net.nml
@@ -1,5 +1,5 @@
- Generated by NeuroMLlite v0.5.9
+ Generated by NeuroMLlite v0.6.0
Generated network: Fig4C_AWCon
Generation seed: 1234
diff --git a/NeuroML2/Fig7B_RMD.net.nml b/NeuroML2/Fig7B_RMD.net.nml
index 15e67a7..7f5cda5 100644
--- a/NeuroML2/Fig7B_RMD.net.nml
+++ b/NeuroML2/Fig7B_RMD.net.nml
@@ -1,5 +1,5 @@
- Generated by NeuroMLlite v0.5.9
+ Generated by NeuroMLlite v0.6.0
Generated network: Fig7B_RMD
Generation seed: 1234
diff --git a/NeuroML2/GenerateNeuroML.py b/NeuroML2/GenerateNeuroML.py
index 4239cac..3e9c1dc 100644
--- a/NeuroML2/GenerateNeuroML.py
+++ b/NeuroML2/GenerateNeuroML.py
@@ -818,6 +818,10 @@ def create_cells(channels_to_include, duration=700, stim_delay=310, stim_duratio
extra_params = [
"backgr",
"cac_nano",
+ "cao_nano",
+ "kcm",
+ "kom",
+ "kop",
"wom",
"wyx",
"kyx",
@@ -836,10 +840,6 @@ def create_cells(channels_to_include, duration=700, stim_delay=310, stim_duratio
"b",
"gsc",
"eca",
- "cao_nano",
- "kcm",
- "kom",
- "kop",
"minf_unc2",
"alpha",
"beta",
diff --git a/NeuroML2/IClamp_AWCon.json b/NeuroML2/IClamp_AWCon.json
index 7d40375..49314d5 100644
--- a/NeuroML2/IClamp_AWCon.json
+++ b/NeuroML2/IClamp_AWCon.json
@@ -1,6 +1,6 @@
{
"IClamp_AWCon": {
- "version": "NeuroMLlite v0.5.9",
+ "version": "NeuroMLlite v0.6.0",
"notes": "A network model: IClamp_AWCon",
"parameters": {
"stim_amp": "10pA",
diff --git a/NeuroML2/IClamp_RMD.json b/NeuroML2/IClamp_RMD.json
index 0a14039..39a8338 100644
--- a/NeuroML2/IClamp_RMD.json
+++ b/NeuroML2/IClamp_RMD.json
@@ -1,6 +1,6 @@
{
"IClamp_RMD": {
- "version": "NeuroMLlite v0.5.9",
+ "version": "NeuroMLlite v0.6.0",
"notes": "A network model: IClamp_RMD",
"parameters": {
"stim_amp": "10pA",
diff --git a/NeuroML2/IClamp_RMD.net.nml b/NeuroML2/IClamp_RMD.net.nml
index 014098e..7b5487a 100644
--- a/NeuroML2/IClamp_RMD.net.nml
+++ b/NeuroML2/IClamp_RMD.net.nml
@@ -1,5 +1,5 @@
- Generated by NeuroMLlite v0.5.9
+ Generated by NeuroMLlite v0.6.0
Generated network: IClamp_RMD
Generation seed: 1234
NeuroMLlite parameters:
diff --git a/NeuroML2/LEMS_Sim_Fig4C_AWCon.xml b/NeuroML2/LEMS_Sim_Fig4C_AWCon.xml
index db186d8..3f7bce2 100644
--- a/NeuroML2/LEMS_Sim_Fig4C_AWCon.xml
+++ b/NeuroML2/LEMS_Sim_Fig4C_AWCon.xml
@@ -2,7 +2,7 @@
diff --git a/NeuroML2/LEMS_Sim_Fig7B_RMD.xml b/NeuroML2/LEMS_Sim_Fig7B_RMD.xml
index 4f87de5..50690cb 100644
--- a/NeuroML2/LEMS_Sim_Fig7B_RMD.xml
+++ b/NeuroML2/LEMS_Sim_Fig7B_RMD.xml
@@ -2,7 +2,7 @@
diff --git a/NeuroML2/LEMS_Sim_IClamp_RMD.xml b/NeuroML2/LEMS_Sim_IClamp_RMD.xml
index bba11d5..a9896b8 100644
--- a/NeuroML2/LEMS_Sim_IClamp_RMD.xml
+++ b/NeuroML2/LEMS_Sim_IClamp_RMD.xml
@@ -2,7 +2,7 @@
diff --git a/NeuroML2/RMD_bk.channel.nml b/NeuroML2/RMD_bk.channel.nml
index cfd2301..0e03628 100644
--- a/NeuroML2/RMD_bk.channel.nml
+++ b/NeuroML2/RMD_bk.channel.nml
@@ -19,6 +19,12 @@
+
+
+
+
+
+
@@ -35,12 +41,6 @@
-
-
-
-
-
-
@@ -79,6 +79,12 @@
+
+
+
+
+
+
@@ -95,12 +101,6 @@
-
-
-
-
-
-
@@ -137,6 +137,12 @@
+
+
+
+
+
+
@@ -153,12 +159,6 @@
-
-
-
-
-
-
@@ -191,6 +191,12 @@
+
+
+
+
+
+
@@ -207,12 +213,6 @@
-
-
-
-
-
-
diff --git a/NeuroML2/Sim_IClamp_AWCon.json b/NeuroML2/Sim_IClamp_AWCon.json
index 13c819b..c40350c 100644
--- a/NeuroML2/Sim_IClamp_AWCon.json
+++ b/NeuroML2/Sim_IClamp_AWCon.json
@@ -1,6 +1,6 @@
{
"Sim_IClamp_AWCon": {
- "version": "NeuroMLlite v0.5.9",
+ "version": "NeuroMLlite v0.6.0",
"network": "IClamp_AWCon.json",
"duration": 2400.0,
"dt": 0.025,
diff --git a/NeuroML2/Sim_IClamp_RMD.json b/NeuroML2/Sim_IClamp_RMD.json
index 77ea136..5344249 100644
--- a/NeuroML2/Sim_IClamp_RMD.json
+++ b/NeuroML2/Sim_IClamp_RMD.json
@@ -1,6 +1,6 @@
{
"Sim_IClamp_RMD": {
- "version": "NeuroMLlite v0.5.9",
+ "version": "NeuroMLlite v0.6.0",
"network": "IClamp_RMD.json",
"duration": 2400.0,
"dt": 0.025,