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@OHDSI Observational Health Data Sciences and Informatics

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    322 repositories

    • d2e

      Public
      [Under development] D2E is an end-to-end solution for management of OMOP data - https://d2e.sg
      ohdsiomop
      TypeScript
      •
      Apache License 2.0
      •0•9•0•1•Updated Apr 1, 2025Apr 1, 2025

    • EvidenceSynthesis

      Public
      An R package for combining evidence from multiple sources (e.g. multiple data sites)
      hades
      R
      •8•8•3•0•Updated Apr 1, 2025Apr 1, 2025

    • TheBookOfOhdsiInJapanese

      Public
      A translation of https://github.com/OHDSI/TheBookOfOhdsi into Japanese
      R
      •
      Creative Commons Zero v1.0 Universal
      •4•3•0•0•Updated Apr 1, 2025Apr 1, 2025

    • ClinicalTrialsWG-TB

      Public
      Clinical Trials Work Group ETL for Tuberculosis studies
      Python
      •
      Apache License 2.0
      •0•1•0•1•Updated Apr 1, 2025Apr 1, 2025

    • OmopViewer

      Public
      R
      •
      Apache License 2.0
      •0•3•30•0•Updated Mar 31, 2025Mar 31, 2025

    • CohortConstructor

      Public
      R
      •
      Apache License 2.0
      •0•2•42•4•Updated Mar 31, 2025Mar 31, 2025

    • PatientLevelPrediction

      Public
      An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.
      hades
      R
      •90•191•28•4•Updated Mar 31, 2025Mar 31, 2025

    • OmopSketch

      Public
      R
      •
      Apache License 2.0
      •0•2•11•2•Updated Mar 31, 2025Mar 31, 2025

    • CohortDiagnostics

      Public
      An R package for performing various cohort diagnostics.
      hades
      R
      •50•43•34•2•Updated Mar 31, 2025Mar 31, 2025

    • drat

      Public
      drat repository for OHDSI R packages
      7•5•0•0•Updated Mar 31, 2025Mar 31, 2025

    • PhenotypeLibrary

      Public
      A repository to store, organize and maintain the content of the OHDSI Phenotype library. OHDSI Forum post https://forums.ohdsi.org/t/ohdsi-phenotype-library-announcements/16910
      hades
      R
      •
      Other
      •18•43•5•0•Updated Mar 31, 2025Mar 31, 2025

    • OncologyWG

      Public
      Oncology Working Group Repository
      Ruby
      •
      Apache License 2.0
      •24•56•164•19•Updated Mar 31, 2025Mar 31, 2025

    • PhenotypeR

      Public
      R
      •
      Apache License 2.0
      •0•3•34•1•Updated Mar 31, 2025Mar 31, 2025

    • ParallelLogger

      Public
      An R package for easy parallel computing, logging, and function call automation.
      hades
      R
      •8•12•2•0•Updated Mar 31, 2025Mar 31, 2025

    • DatabaseConnector

      Public
      An R package for connecting to databases using JDBC.
      hades
      R
      •86•56•36•1•Updated Mar 31, 2025Mar 31, 2025

    • Cyclops

      Public
      Cyclops (Cyclic coordinate descent for logistic, Poisson and survival analysis) is an R package for performing large scale regularized regressions.
      hades
      C++
      •32•39•20•1•Updated Mar 29, 2025Mar 29, 2025

    • CohortGenerator

      Public
      Cohort Generation for the OMOP Common Data Model
      hades
      R
      •11•13•22•4•Updated Mar 29, 2025Mar 29, 2025

    • Capr

      Public
      Cohort definition Application Programming in R
      hades
      R
      •
      Apache License 2.0
      •14•17•7•2•Updated Mar 28, 2025Mar 28, 2025

    • SelfControlledCaseSeries

      Public
      An R package for performing Self-Controlled Case Series (SCCS) analyses in an observational database in the OMOP Common Data Model.
      hades
      R
      •8•13•16•0•Updated Mar 28, 2025Mar 28, 2025

    • Atlas

      Public
      ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data
      JavaScript
      •
      Apache License 2.0
      •140•281•215•20•Updated Mar 27, 2025Mar 27, 2025

    • Strategus

      Public
      An R package for coordinating and executing analytics using HADES modules
      R
      •11•6•17•2•Updated Mar 27, 2025Mar 27, 2025

    • ClinicalCharacteristics

      Public
      [under development] table shell approach to OMOP characterization
      R
      •
      Apache License 2.0
      •2•1•11•1•Updated Mar 27, 2025Mar 27, 2025

    • trex

      Public
      [Under development] Trex is the runtime for the D2E platform
      Apache License 2.0
      •0•0•0•0•Updated Mar 27, 2025Mar 27, 2025

    • Kala

      Public
      [Under development] Kala is an R package that takes one or more instantiated cohort as input and produces time series features, decomposition's, statistical summaries and convenient visualizations.
      R
      •3•3•3•0•Updated Mar 26, 2025Mar 26, 2025

    • Vocabulary-v5.0

      Public
      Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.
      PLpgSQL
      •
      The Unlicense
      •75•234•204•11•Updated Mar 26, 2025Mar 26, 2025

    • ARTEMIS

      Public
      R
      •
      Apache License 2.0
      •3•2•1•0•Updated Mar 26, 2025Mar 26, 2025

    • WebAPI

      Public
      OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications
      Java
      •
      Apache License 2.0
      •171•136•125•19•Updated Mar 25, 2025Mar 25, 2025

    • Achilles

      Public
      Automated Characterization of Health Information at Large-scale Longitudinal Evidence Systems (ACHILLES) - descriptive statistics about a OMOP CDM database
      R
      •123•135•52•6•Updated Mar 25, 2025Mar 25, 2025

    • OhdsiShinyModules

      Public
      An R package containing Shiny modules used by various OHDSI Shiny apps
      R
      •11•8•64•4•Updated Mar 25, 2025Mar 25, 2025

    • SkeletonCohortCharacterization

      Public
      Java
      •
      Apache License 2.0
      •3•2•5•4•Updated Mar 25, 2025Mar 25, 2025