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    178 repositories

    • snappy-pipeline

      Public
      SNAPPY Nucleic Acid Processing in Python
      Python
      •
      MIT License
      •6•10•121•25•Updated Aug 8, 2025Aug 8, 2025

    • reev

      Public
      REEV: Explanation and Evaluation of Variants
      TypeScript
      •
      MIT License
      •5•10•40•11•Updated Aug 5, 2025Aug 5, 2025

    • ood-bih-rstudio-server

      Public
      Open OnDemand App: RStudio Server
      Shell
      •
      MIT License
      •1•1•1•0•Updated Aug 4, 2025Aug 4, 2025

    • Fracture-healing-and-aging-scSeq

      Public
      single-cell bone healing project
      R
      •0•0•0•0•Updated Aug 4, 2025Aug 4, 2025

    • swibrid

      Public
      Python
      •0•0•0•0•Updated Aug 1, 2025Aug 1, 2025

    • swibrid_paper

      Public
      Code and scripts for SWIBRID publication
      Jupyter Notebook
      •0•0•0•0•Updated Aug 1, 2025Aug 1, 2025

    • StemCNV-check

      Public
      R
      •
      MIT License
      •0•2•4•0•Updated Jul 31, 2025Jul 31, 2025

    • cubi-tk

      Public
      CUBI Tooling for SODAR, VarFish et al.
      Python
      •
      MIT License
      •5•5•45•2•Updated Jul 31, 2025Jul 31, 2025

    • seasnap-pipeline

      Public
      SeA-SnaP: (Se)q (A)nalysis (Sna)kemake (P)ipeline
      Python
      •2•1•24•3•Updated Jul 28, 2025Jul 28, 2025

    • bih-cluster

      Public
      BIH Cluster Wiki
      Awk
      •
      Other
      •35•17•6•1•Updated Jul 23, 2025Jul 23, 2025

    • biomedsheets

      Public
      📚 JSON/TSV sample sheets for biomedical experiments
      bioinformaticsdata-management
      Python
      •4•4•4•3•Updated Jul 22, 2025Jul 22, 2025

    • nf-core-configs

      Public
      Config files used to define parameters specific to compute environments at different Institutions
      Nextflow
      •
      MIT License
      •319•0•0•1•Updated Jul 22, 2025Jul 22, 2025

    • dotty

      Public
      cdot-based transcript projections
      Python
      •
      MIT License
      •0•0•2•2•Updated Jul 21, 2025Jul 21, 2025

    • sodar-server

      Public
      SODAR: System for Omics Data Access and Retrieval
      Python
      •
      MIT License
      •3•15•363•0•Updated Jul 18, 2025Jul 18, 2025

    • reev-frontend-lib

      Public
      Re-useable components from REEV
      TypeScript
      •1•0•1•8•Updated Jul 16, 2025Jul 16, 2025

    • sodar-core

      Public
      SODAR Core: A Django-based framework for building scientific data management web apps
      Python
      •
      MIT License
      •1•10•261•0•Updated Jul 10, 2025Jul 10, 2025

    • sodar-django-site

      Public
      Django site template for SODAR Core based projects
      Python
      •
      MIT License
      •0•1•0•0•Updated Jul 10, 2025Jul 10, 2025

    • kolla-ansible

      Public
      Ansible deployment of the Kolla containers. Mirror of code maintained at opendev.org.
      Jinja
      •
      Apache License 2.0
      •662•0•0•0•Updated Jul 8, 2025Jul 8, 2025

    • kayobe

      Public
      Deployment of containerised OpenStack to bare metal using kolla and bifrost. Mirror of code maintained at opendev.org.
      Python
      •
      Apache License 2.0
      •34•0•0•0•Updated Jul 8, 2025Jul 8, 2025

    • netbox-docker

      Public
      🐳 Docker Image of NetBox
      Python
      •
      Apache License 2.0
      •1k•0•0•0•Updated Jul 7, 2025Jul 7, 2025

    • hpc-access

      Public
      Web interface for managing access and resource requests for the BIH cluster
      Python
      •
      MIT License
      •0•0•42•5•Updated Jul 2, 2025Jul 2, 2025

    • sodar-docker-compose

      Public
      Setup SODAR using Docker Compose
      Shell
      •
      MIT License
      •3•3•14•1•Updated May 28, 2025May 28, 2025

    • apptainer-xfce

      Public
      Singularity container for Xfce desktop in CentOS 7.
      0•0•0•0•Updated May 28, 2025May 28, 2025

    • apptainer-mate

      Public
      Singularity container for MATE desktop in CentOS 7.
      MIT License
      •1•0•0•0•Updated May 28, 2025May 28, 2025

    • hpc-access-cli

      Public
      Python
      •
      MIT License
      •0•0•1•6•Updated Apr 8, 2025Apr 8, 2025

    • kiosc-server

      Public
      dockerdjango
      Python
      •
      MIT License
      •1•1•28•3•Updated Mar 14, 2025Mar 14, 2025

    • manuscript-sutherland-cytokines

      Public
      Supplementary materials for the paper
      TeX
      •0•0•0•0•Updated Feb 28, 2025Feb 28, 2025

    • sssd-docker

      Public
      Dockerized SSSD for dockerized iRODS deployments
      Shell
      •
      MIT License
      •0•0•3•0•Updated Feb 21, 2025Feb 21, 2025

    • sodar-cli

      Public
      SODAR REST API client (CLI + Python package)
      Python
      •
      MIT License
      •1•1•6•3•Updated Feb 21, 2025Feb 21, 2025

    • irods-docker

      Public
      iRODS Docker image for use with SODAR
      Jinja
      •
      MIT License
      •2•2•14•0•Updated Feb 20, 2025Feb 20, 2025