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Integrate J-Browse Circular View #24

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4 of 7 tasks
b-f-chan opened this issue Jun 22, 2023 · 1 comment
Open
4 of 7 tasks

Integrate J-Browse Circular View #24

b-f-chan opened this issue Jun 22, 2023 · 1 comment

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@b-f-chan
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b-f-chan commented Jun 22, 2023

Placeholder for backlog --> This might become an epic

Task Breakdown:

  • First test loading with files with actual Translocations --> Reach out to Caroline & bioinfo
  • Add logic to restrict circular to only VCFs with an Index (TBI file) (can re-use logic for Linear view)
  • Add drop-down options for Linear and Circular (can do it normal React way or previously done method)
  • Rename J-Browse to Genome Viewer + remove Logo from button as well
  • Update error handling logic to account for Circular view also (can re-use logic for Linear view) --> Make sure logic and messages are appropriate for Circular view vs Linear view

Notes:

  • Check if we want to note BAM files as incompatible for Circular view
  • NOTE: Error checking for Translocation will be deferred to J-Browse team
@b-f-chan
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We will do this post MVP --> Confirmed

Check if Patrick needs to do mockups

@b-f-chan b-f-chan added the Epic label Sep 11, 2023
@b-f-chan b-f-chan changed the title Implement J-Browse Circular View Integrate J-Browse Circular View Sep 12, 2023
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