From a90a79246b16147b82c75703da0f066355e9efeb Mon Sep 17 00:00:00 2001
From: Jason Stajich <jasonstajich.phd@gmail.com>
Date: Thu, 17 May 2018 11:09:08 -0700
Subject: [PATCH] Need to run autoconf/autoheader

Need to run autoheader/autoconf on the htslib code as distributed otherwise no 'configure' is available in the folder causing cmake/make of kallisto to fail.
---
 INSTALL.md | 8 ++++++++
 1 file changed, 8 insertions(+)

diff --git a/INSTALL.md b/INSTALL.md
index 6047e1f9..96cdff0a 100644
--- a/INSTALL.md
+++ b/INSTALL.md
@@ -21,6 +21,13 @@ Installation
     ```
     cd kallisto
     ```
+1. Setup the htslib code [https://github.com/samtools/htslib](htslib)
+
+    ```cd ext/htslib
+    autoheader
+    autoconf
+    cd ..
+    ```
 
 1. Make a build directory and move there
 
@@ -40,6 +47,7 @@ Installation
     This is only required when one of the `CMakeLists.txt` files changes or new
     source files are introduced. It will make a new set of `Makefile`s
 
+
 1. Build the code
 
     ```