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I just hit an error using looper and the --sel-excl flag. I was trying to exclude a specific set of samples from running through my pipeline. As such I was using the --sel-attr + --sel-excl flags. Here is the full traceback:
Traceback (most recent call last):
File "/sfs/gpfs/tardis/home/xjk5hp/code/scripts/model-training/atacformer-scatlas-base/.venv/bin/looper", line 8, in <module>
sys.exit(main_cli())
^^^^^^^^^^
File "/sfs/gpfs/tardis/home/xjk5hp/code/scripts/model-training/atacformer-scatlas-base/.venv/lib/python3.11/site-packages/looper/cli_pydantic.py", line 357, in main_cli
main()
File "/sfs/gpfs/tardis/home/xjk5hp/code/scripts/model-training/atacformer-scatlas-base/.venv/lib/python3.11/site-packages/looper/cli_pydantic.py", line 353, in main
return run_looper(args, parser, test_args=test_args)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/sfs/gpfs/tardis/home/xjk5hp/code/scripts/model-training/atacformer-scatlas-base/.venv/lib/python3.11/site-packages/looper/cli_pydantic.py", line 269, in run_looper
run = Runner(prj)
^^^^^^^^^^^
File "/sfs/gpfs/tardis/home/xjk5hp/code/scripts/model-training/atacformer-scatlas-base/.venv/lib/python3.11/site-packages/looper/looper.py", line 74, in __init__
self.counter = LooperCounter(len(prj.samples))
^^^^^^^^^^^
File "/sfs/gpfs/tardis/home/xjk5hp/code/scripts/model-training/atacformer-scatlas-base/.venv/lib/python3.11/site-packages/looper/project.py", line 63, in __getattr__
return fetch_samples(
^^^^^^^^^^^^^^
File "/sfs/gpfs/tardis/home/xjk5hp/code/scripts/model-training/atacformer-scatlas-base/.venv/lib/python3.11/site-packages/looper/project.py", line 829, in fetch_samples
kept_samples = list(filter(keep, kept_samples))
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/sfs/gpfs/tardis/home/xjk5hp/code/scripts/model-training/atacformer-scatlas-base/.venv/lib/python3.11/site-packages/looper/project.py", line 818, in keep
return not hasattr(s, selector_attribute) or getattr(
^^^^^^^^
TypeError: 'in <string>' requires string as left operand, not list
The reason I believe its the --sel-excl flag killing things is because of where this error originates. Moreover, running without this flag lets the pipeline run as normal.
The text was updated successfully, but these errors were encountered:
I just hit an error using
looper
and the--sel-excl
flag. I was trying to exclude a specific set of samples from running through my pipeline. As such I was using the--sel-attr
+--sel-excl
flags. Here is the full traceback:The reason I believe its the
--sel-excl
flag killing things is because of where this error originates. Moreover, running without this flag lets the pipeline run as normal.The text was updated successfully, but these errors were encountered: