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Add relaxed states for the forcefield amber14/protein.ff14SB.xml
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files/AD_A.pdb

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MODEL 0
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ATOM 1 H1 ACE A 1 -2.882 -0.906 2.598 1.00 0.00 H
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ATOM 2 CH3 ACE A 1 -2.608 0.143 2.592 1.00 0.00 C
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ATOM 3 H2 ACE A 1 -2.707 0.546 3.597 1.00 0.00 H
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ATOM 4 H3 ACE A 1 -3.262 0.682 1.923 1.00 0.00 H
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ATOM 5 C ACE A 1 -1.176 0.282 2.163 1.00 0.00 C
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ATOM 6 O ACE A 1 -0.338 0.684 2.950 1.00 0.00 O
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ATOM 7 N ALA A 2 -0.900 -0.036 0.917 1.00 0.00 N
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ATOM 8 H ALA A 2 -1.647 -0.353 0.324 1.00 0.00 H
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ATOM 9 CA ALA A 2 0.429 0.024 0.295 1.00 0.00 C
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ATOM 10 HA ALA A 2 0.975 0.880 0.657 1.00 0.00 H
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ATOM 11 CB ALA A 2 1.198 -1.256 0.659 1.00 0.00 C
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ATOM 12 HB1 ALA A 2 2.181 -1.252 0.188 1.00 0.00 H
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ATOM 13 HB2 ALA A 2 0.647 -2.153 0.315 1.00 0.00 H
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ATOM 14 HB3 ALA A 2 1.339 -1.270 1.750 1.00 0.00 H
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ATOM 15 C ALA A 2 0.310 0.143 -1.227 1.00 0.00 C
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ATOM 16 O ALA A 2 -0.745 -0.167 -1.785 1.00 0.00 O
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ATOM 17 N NME A 3 1.381 0.525 -1.919 1.00 0.00 N
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ATOM 18 H NME A 3 2.224 0.737 -1.436 1.00 0.00 H
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ATOM 19 C NME A 3 1.401 0.656 -3.366 1.00 0.00 C
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ATOM 20 H1 NME A 3 1.022 -0.271 -3.796 1.00 0.00 H
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ATOM 21 H2 NME A 3 0.752 1.480 -3.668 1.00 0.00 H
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ATOM 22 H3 NME A 3 2.406 0.882 -3.731 1.00 0.00 H
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TER 23 NME A 3
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ENDMDL
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CONECT 1 2
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CONECT 2 5 1 3 4
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CONECT 3 2
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CONECT 4 2
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CONECT 5 2 6 7
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CONECT 6 5
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CONECT 7 5
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CONECT 15 17
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CONECT 17 15 19 18
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CONECT 18 17
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CONECT 19 20 21 22 17
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CONECT 20 19
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CONECT 21 19
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CONECT 22 19
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END

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