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jimhesterjimhester
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Update to latest GitHub Actions workflows
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‎.github/.gitignore

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*.html

‎.github/workflows/R-CMD-check.yaml

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@@ -12,77 +12,88 @@ jobs:
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R-CMD-check:
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runs-on: ${{ matrix.config.os }}
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name: ${{ matrix.config.os }} (${{ matrix.config.r }}) ${{ matrix.config.locale }}
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name: ${{ matrix.config.os }} (${{ matrix.config.r }})
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strategy:
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fail-fast: false
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matrix:
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config:
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- {os: macOS-latest, r: 'release'}
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- {os: windows-latest, r: 'release'}
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- {os: windows-latest, r: '3.6'}
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- {os: macOS-latest, r: '3.6'}
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- {os: macOS-latest, r: 'devel'}
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- {os: ubuntu-16.04, r: '3.2', cran: "https://demo.rstudiopm.com/all/__linux__/xenial/latest"}
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- {os: ubuntu-16.04, r: '3.3', cran: "https://demo.rstudiopm.com/all/__linux__/xenial/latest"}
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- {os: ubuntu-16.04, r: '3.4', cran: "https://demo.rstudiopm.com/all/__linux__/xenial/latest"}
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- {os: ubuntu-16.04, r: '3.5', cran: "https://demo.rstudiopm.com/all/__linux__/xenial/latest"}
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- {os: ubuntu-16.04, r: '3.6', cran: "https://demo.rstudiopm.com/all/__linux__/xenial/latest"}
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- {os: ubuntu-16.04, r: '3.6', cran: "https://demo.rstudiopm.com/all/__linux__/xenial/latest", locale: 'en_US'}
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- {os: ubuntu-16.04, r: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest", http-user-agent: "R/4.0.0 (ubuntu-16.04) R (4.0.0 x86_64-pc-linux-gnu x86_64 linux-gnu) on GitHub Actions" }
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- {os: ubuntu-16.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"}
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- {os: ubuntu-16.04, r: 'oldrel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"}
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- {os: ubuntu-16.04, r: '3.5', rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"}
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- {os: ubuntu-16.04, r: '3.4', rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"}
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- {os: ubuntu-16.04, r: '3.3', rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"}
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- {os: ubuntu-16.04, r: '3.6', rspm: "https://demo.rstudiopm.com/all/__linux__/xenial/latest", locale: 'en_US'}
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env:
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R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
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CRAN: ${{ matrix.config.cran }}
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RSPM: ${{ matrix.config.rspm }}
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GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
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steps:
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- uses: actions/checkout@v2
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- name: Set locale
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if: matrix.config.locale == 'en_US'
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run: |
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sudo locale-gen en_US
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echo "::set-env name=LC_ALL::en_US"
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- uses: r-lib/actions/setup-r@master
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with:
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r-version: ${{ matrix.config.r }}
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http-user-agent: ${{ matrix.config.http-user-agent }}
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- uses: r-lib/actions/setup-pandoc@master
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- name: Query dependencies
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run: |
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install.packages('remotes')
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saveRDS(remotes::dev_package_deps(dependencies = TRUE), "depends.Rds", version = 2)
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saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
51+
writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
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shell: Rscript {0}
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- name: Cache R packages
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if: runner.os != 'Windows'
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uses: actions/cache@v1
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with:
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path: ${{ env.R_LIBS_USER }}
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key: ${{ runner.os }}-r-${{ matrix.config.r }}-${{ hashFiles('depends.Rds') }}
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restore-keys: ${{ runner.os }}-r-${{ matrix.config.r }}-
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key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
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restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-
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- name: Install system dependencies
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if: runner.os == 'Linux'
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env:
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RHUB_PLATFORM: linux-x86_64-ubuntu-gcc
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run: |
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Rscript -e "remotes::install_github('r-hub/sysreqs')"
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sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))")
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sudo -s eval "$sysreqs"
65+
while read -r cmd
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do
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eval sudo $cmd
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done < <(Rscript -e 'cat(remotes::system_requirements("ubuntu", "16.04"), sep = "\n")')
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- name: Install dependencies
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run: |
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remotes::install_deps(dependencies = TRUE)
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remotes::install_cran("rcmdcheck")
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shell: Rscript {0}
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- name: Session info
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run: |
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options(width = 100)
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pkgs <- installed.packages()[, "Package"]
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sessioninfo::session_info(pkgs, include_base = TRUE)
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shell: Rscript {0}
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- name: Check
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run: rcmdcheck::rcmdcheck(args = "--no-manual", error_on = "warning", check_dir = "check")
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env:
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_R_CHECK_CRAN_INCOMING_: false
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run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check")
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shell: Rscript {0}
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- name: Show testthat output
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if: always()
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run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true
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shell: bash
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- name: Upload check results
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if: failure()
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uses: actions/upload-artifact@master
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uses: actions/upload-artifact@main
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with:
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name: ${{ runner.os }}-r${{ matrix.config.r }}-results
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path: check

‎.github/workflows/pkgdown.yaml

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@@ -7,6 +7,8 @@ name: pkgdown
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jobs:
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pkgdown:
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runs-on: macOS-latest
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env:
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GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
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steps:
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- uses: actions/checkout@v2
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@@ -17,26 +19,28 @@ jobs:
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- name: Query dependencies
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run: |
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install.packages('remotes')
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saveRDS(remotes::dev_package_deps(dependencies = TRUE), "depends.Rds", version = 2)
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saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
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writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
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shell: Rscript {0}
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- name: Cache R packages
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uses: actions/cache@v1
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with:
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path: ${{ env.R_LIBS_USER }}
27-
key: macOS-r-3.6-${{ hashFiles('depends.Rds') }}
28-
restore-keys: macOS-r-3.6-
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key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
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restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-
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3033
- name: Install dependencies
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run: |
32-
install.packages("remotes")
3335
remotes::install_deps(dependencies = TRUE)
34-
remotes::install_dev("pkgdown")
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install.packages("pkgdown")
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shell: Rscript {0}
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- name: Install package
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run: R CMD INSTALL .
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- name: Deploy package
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run: pkgdown::deploy_to_branch(new_process = FALSE)
42-
shell: Rscript {0}
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run: |
44+
git config --local user.email "[email protected]"
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git config --local user.name "GitHub Actions"
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Rscript -e 'pkgdown::deploy_to_branch(new_process = FALSE)'

‎.github/workflows/pr-commands.yaml

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@@ -7,6 +7,8 @@ jobs:
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if: startsWith(github.event.comment.body, '/document')
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name: document
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runs-on: macOS-latest
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env:
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GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
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steps:
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- uses: actions/checkout@v2
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- uses: r-lib/actions/pr-fetch@master
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run: Rscript -e 'roxygen2::roxygenise()'
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- name: commit
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run: |
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git config --local user.email "[email protected]"
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git config --local user.name "GitHub Actions"
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git add man/\* NAMESPACE
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git commit -m 'Document'
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- uses: r-lib/actions/pr-push@master
@@ -28,6 +32,8 @@ jobs:
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if: startsWith(github.event.comment.body, '/style')
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name: style
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runs-on: macOS-latest
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env:
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GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
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steps:
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- uses: actions/checkout@v2
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- uses: r-lib/actions/pr-fetch@master
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run: Rscript -e 'styler::style_pkg()'
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- name: commit
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run: |
49+
git config --local user.email "[email protected]"
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git config --local user.name "GitHub Actions"
4351
git add \*.R
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git commit -m 'Style'
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- uses: r-lib/actions/pr-push@master
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with:
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repo-token: ${{ secrets.GITHUB_TOKEN }}
48-
# A mock job just to ensure we have a successful build status
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finish:
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runs-on: ubuntu-latest
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steps:
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- run: true

‎.github/workflows/test-coverage.yaml

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@@ -11,6 +11,8 @@ name: test-coverage
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jobs:
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test-coverage:
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runs-on: macOS-latest
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env:
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GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
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steps:
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- uses: actions/checkout@v2
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@@ -21,15 +23,16 @@ jobs:
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- name: Query dependencies
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run: |
2325
install.packages('remotes')
24-
saveRDS(remotes::dev_package_deps(dependencies = TRUE), "depends.Rds", version = 2)
26+
saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
27+
writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
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shell: Rscript {0}
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2730
- name: Cache R packages
2831
uses: actions/cache@v1
2932
with:
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path: ${{ env.R_LIBS_USER }}
31-
key: macOS-r-3.6-${{ hashFiles('depends.Rds') }}
32-
restore-keys: macOS-r-3.6-
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key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
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restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-
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- name: Install dependencies
3538
run: |

‎appveyor.yml

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This file was deleted.

‎codecov.yml

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default:
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target: auto
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threshold: 1%
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informational: true
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patch:
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default:
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target: auto
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threshold: 1%
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informational: true

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