big update: use webpack only

Author: r03ert0

.eslintrc.js

@@ -6,7 +6,8 @@ module.exports = {
     },
     "extends": "eslint:recommended",
     "parserOptions": {
-        "sourceType": "module"
+        "sourceType": "module",
+        "ecmaVersion": 8
     },
     "rules": {
         "accessor-pairs": "error",

Annotations.md

@@ -1,4 +1,4 @@
-Copyright [2016] OpenNeuroLab Developers
+Copyright [2016] BrainBox Developers
 
    Licensed under the Apache License, Version 2.0 (the "License");
    you may not use this file except in compliance with the License.

BrainMappers.md

@@ -1,7 +1,7 @@
 
 [![CircleCI](https://circleci.com/gh/neuroanatomy/BrainBox/tree/master.svg?style=shield)](https://circleci.com/gh/neuroanatomy/BrainBox/tree/master) [![Join the chat at https://gitter.im/OpenNeuroLab-Brainbox/Lobby](https://badges.gitter.im/Join%20Chat.svg)](https://gitter.im/OpenNeuroLab-Brainbox/Lobby?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge&utm_content=badge)
 
-# BrainBox - An application from the [Open Neuroimaging Laboratory](http://openneu.ro/)
+# BrainBox - A platform for real-time collaboration in neuroimaging
 
 [![Join the chat at https://gitter.im/OpenNeuroLab-Brainbox/Lobby](https://badges.gitter.im/OpenNeuroLab-Brainbox/Lobby.svg)](https://gitter.im/OpenNeuroLab-Brainbox/Lobby?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge&utm_content=badge)
 

BrainMappersCorpusCallosum.md

@@ -8,8 +8,6 @@
     Launch using > node atlasMakerServer.js
 */
 
-const debug = 1;
-
 const fs = require('fs');
 const express = require('express');
 const path = require('path');
@@ -19,13 +17,15 @@ const tracer = require('tracer').console({format: '[{{file}}:{{line}}]  {{messag
 const cookieParser = require('cookie-parser');
 const bodyParser = require('body-parser');
 const mustacheExpress = require('mustache-express');
-const crypto = require('crypto');
-const request = require('request');
-const url = require('url');
-const async = require('async');
-const mongo = require('mongodb');
 const monk = require('monk');
 
+// const debug = 1;
+// const crypto = require('crypto');
+// const request = require('request');
+// const url = require('url');
+// const async = require('async');
+// const mongo = require('mongodb');
+
 let MONGO_DB;
 const DOCKER_DB = process.env.DB_PORT;
 const DOCKER_DEVELOP = process.env.DEVELOP;
@@ -36,6 +36,7 @@ if (DOCKER_DB) {
   MONGO_DB = 'localhost:27017/brainbox'; //process.env.MONGODB;
 }
 
+/** @todo Handle the case when MongoDB is not installed */
 var db = monk(MONGO_DB);
 var expressValidator = require('express-validator');
 
@@ -55,7 +56,7 @@ if (DOCKER_DEVELOP === '1') {
 
     // Specify the folder to watch for file-changes.
     hotServer.watch(__dirname);
-    tracer.log('Watching: ' + __dirname);
+    tracer.log(`Watching: ${__dirname}`);
 }
 
 const app = express();
@@ -249,14 +250,13 @@ app.use('/user', require('./controller/user/'));
 
 // { API routes
 app.get('/api/getLabelsets', (req, res) => {
-    let i;
     const arr = fs.readdirSync(dirname + '/public/labels/');
     const info = [];
-    for (i in arr) {
-        var json = JSON.parse(fs.readFileSync(dirname + "/public/labels/" + arr[i]));
+    for (const label of arr) {
+        var json = JSON.parse(fs.readFileSync(dirname + "/public/labels/" + label));
         info.push({
             name: json.name,
-            source: arr[i]
+            source: label
         });
     }
     res.send(info);

LICENSE

@@ -85,7 +85,7 @@ var upload = function(req, res) {
     var files = req.files;
 
     delete mri._id;
-    
+
     console.log("Everything is in order");
     console.log("username:",username);
     console.log("url:", url);
@@ -94,19 +94,20 @@ var upload = function(req, res) {
     console.log("atlasProject:", atlasProject);
     console.log("atlasLabelSet:", atlasLabelSet);
     console.log("files:", files);
-        
+
     // create final filename
     var ext;
     var filename;
     var dir, path;
-    if(/.nii.gz$/.test(files[0].originalname))
+
+    if(/.nii.gz$/.test(files[0].originalname)) {
         ext=".nii.gz";
-    else
-    if(/.mgz$/.test(files[0].originalname))
+    } else if(/.mgz$/.test(files[0].originalname)) {
         ext=".mgz";
-    else {
+    } else {
         return res.json({error:"Atlas encoding neither .nii.gz nor .mgz"}).status(400).end();
     }
+
     filename=Math.random().toString(36).slice(2)+ext;
 
     // check if directory exists (it may not exist if a volume annotation is being uploaded