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‎.spyproject/config/backups/codestyle.ini.bak

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[codestyle]
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indentation = True
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edge_line = True
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edge_line_columns = 79
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[main]
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version = 0.2.0
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‎.spyproject/config/backups/encoding.ini.bak

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[encoding]
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text_encoding = utf-8
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[main]
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version = 0.2.0
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‎.spyproject/config/backups/vcs.ini.bak

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[vcs]
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use_version_control = False
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version_control_system =
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[main]
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version = 0.2.0
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‎.spyproject/config/backups/workspace.ini.bak

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[workspace]
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restore_data_on_startup = True
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save_data_on_exit = True
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save_history = True
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save_non_project_files = False
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project_type = 'empty-project-type'
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recent_files = ['benspy_extwaves.py', 'benspy_drum2wave.py', 'benspy_getwaves.py', 'seismo_section.py', '../../../../home/seismo/GDrive/OngoingPapers/InSight/RayleighEllipticity/rayleigh_ellipticity/REllipticity.py', 'seismogram_eq.py']
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[main]
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version = 0.2.0
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recent_files = []
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‎.spyproject/config/codestyle.ini

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[codestyle]
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indentation = True
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edge_line = True
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edge_line_columns = 79
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[main]
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version = 0.2.0
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‎.spyproject/config/defaults/defaults-codestyle-0.2.0.ini

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[codestyle]
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indentation = True
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edge_line = True
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edge_line_columns = 79
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‎.spyproject/config/defaults/defaults-encoding-0.2.0.ini

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[encoding]
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text_encoding = utf-8
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‎.spyproject/config/defaults/defaults-vcs-0.2.0.ini

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[vcs]
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use_version_control = False
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version_control_system =
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‎.spyproject/config/defaults/defaults-workspace-0.2.0.ini

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[workspace]
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restore_data_on_startup = True
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save_data_on_exit = True
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save_history = True
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save_non_project_files = False
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‎.spyproject/config/encoding.ini

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[encoding]
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text_encoding = utf-8
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[main]
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version = 0.2.0
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‎.spyproject/config/vcs.ini

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[vcs]
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use_version_control = False
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version_control_system =
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[main]
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version = 0.2.0
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‎.spyproject/config/workspace.ini

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[workspace]
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restore_data_on_startup = True
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save_data_on_exit = True
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save_history = True
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save_non_project_files = False
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project_type = 'empty-project-type'
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recent_files = ['benspy_drum2wave.py', 'benspy_getwaves.py', 'seismo_section.py', '../../../../home/seismo/GDrive/OngoingPapers/InSight/RayleighEllipticity/rayleigh_ellipticity/REllipticity.py']
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[main]
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version = 0.2.0
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recent_files = []
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‎Map/Station_params.txt

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sta,net,lat,lon,ele
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BD15,B4,50.9145,6.5903,74.0
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BER,B4,50.9593,6.6355,78.0
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HNK,B4,51.096533,6.464822,133.0
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MIL,B4,50.991683,6.556971,125.0
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ROE,B4,50.943313,6.674004,126.0
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SIN,B4,50.917506,6.66368,123.0
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HMB,B4,50.936491,6.483115,139.0
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BD17,B4,51.046901,6.404548,143.0
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BD14,B4,51.081524,6.392214,122.0
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FUN,B4,50.884191,6.501562,158.0
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AHRW,GR,50.541,7.076,-319.0
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BUG,GR,51.4412,7.2707,65.0
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KAST,GR,51.20272,8.416204,616.0
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MILB,GR,49.8284,9.2923,369.0
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TNS,GR,50.2236,8.4489,815.0
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HGN,NL,50.764,5.9317,135.0
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HRKB,NL,51.1879,6.1678,1.0
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MAME,NL,50.8,5.9727,154.0
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OPLO,NL,51.5888,5.8121,1.0
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ROLD,NL,50.86939,6.08469,145.0
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TERZ,NL,50.756763,5.906114,150.0
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VKB,NL,50.8669,5.7847,90.0
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BHE,NH,50.3529,7.1796,290.0
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ENT,NH,51.2416,7.4115,300.0
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GSH,NH,50.7359,6.3797,370.0
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HES,NH,51.367,7.042,130.0
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LOH,NH,50.1825,6.5356,580.0
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OLF,NH,50.4939,6.4202,470.0
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PLH,NH,51.0043,6.8199,-300.0
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RWB,NH,51.1018,6.155,45.0
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SOR,NH,51.3497,7.9714,280.0
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TDN,NH,50.575,6.9445,406.0
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WBS,NH,50.8061,7.2831,130.0
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XAN,NH,51.663,6.452,24.0
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ACN,NH,50.7746,6.0839,163.0
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JCK,NH,51.0353,6.4314,109.0
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BA01,BQ,50.7789,6.0614,216.0
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BA02,BQ,50.7722,6.2157,230.0
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BA04,BQ,50.762,6.7941,118.0
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BA05,BQ,50.9175,6.6637,72.0
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BA06,BQ,50.9196,6.7052,73.0
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BA08,BQ,50.9642,7.0755,58.0
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BA09,BQ,50.9638,7.1755,200.0
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BA10,BQ,50.6131,6.9945,186.0
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BA11,BQ,50.7666,6.501,138.0
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BA12,BQ,50.9091,6.1863,116.0
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BA13,BQ,51.0707,6.0753,42.0
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BA14,BQ,50.6717,6.5661,239.0
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BA15,BQ,50.7117,6.9275,157.0
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BA16,BQ,51.0301,6.6616,81.0
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BA17,BQ,51.2516,6.3657,65.0
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BA18,BQ,50.5938,6.8393,262.0
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BA26,BQ,50.9261,6.9329,47.0
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BA19,BQ,50.9412,6.9577,48.0
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BA20,BQ,50.9412,6.9577,80.0
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BA21,BQ,50.9412,6.9577,135.0
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BA22,BQ,50.9412,6.9577,165.0
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BA23,BQ,50.9412,6.9577,110.0
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BA30,BQ,50.842519,6.278102,157.0
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DREG,BQ,50.661833,6.23,395.0
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BNS,BQ,50.96297,7.17501,262.0
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HOBG,BQ,50.98273,7.33271,270.0
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HILG,BQ,50.291974,6.678656,571.0
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JUE,BQ,50.910534,6.409547,148.0
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BGG,BQ,50.20507,7.33665,140.0
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KLL,BQ,50.6467,6.3113,440.0
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KOE,BQ,50.42407,7.731363,601.0
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LAUG,BQ,51.350569,6.940529,187.0
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RODG,BQ,51.1447,6.1803,70.0
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NAST,BQ,50.195425,7.860908,374.0
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BEBN,BE,50.797,5.6778,80.0
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OPTB,BE,51.1115,5.636,51.0
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RCHB,BE,50.1559,5.2276,221.0
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UCC,BE,50.79724,4.36038,100.0
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MEM,BE,50.608691,6.009614,244.3
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MRG,BE,50.51123,6.07412,674.0
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HOU,BE,50.35356,6.00517,495.0
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BIW,LE,50.7308,7.8373,312.0
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GLOK,LE,50.54466,7.43375,293.0
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LAGB,LE,50.3608,7.1007,372.0
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MUEZ,LE,50.26253,6.25044,543.0
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HMES,RN,51.65777,7.72634,56.0
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BAVN,RN,51.738,7.122,65.0
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BPFI,RN,51.4185,7.2276,120.0
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ZER1,RN,51.59472,6.82523,58.0
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DOR50,YD,51.525864,7.553876,76.0
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HAM29,YD,51.659767,7.822975,66.0
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LUN39,YD,51.603756,7.538812,46.0
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WER38,YD,51.65009,7.565257,77.0
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KLB,LU,50.1,6.109,475.0
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VIA,LU,49.9351,6.2025,306.0
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WILW,LU,49.99233,6.00481,357.0
94+
CB21,ZB,50.860186,6.330475,139.0
95+
CB22,ZB,50.82393176,6.31124583,190.272
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TB16,ZB,50.87974,6.331636,146.0
97+
TB17,ZB,50.852841,6.316028,183.0
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TB18,ZB,50.801145,6.280039,193.0
99+
TB19,ZB,50.849672,6.351232,170.0
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TB20,ZB,50.92868145,6.32374391,120.967
101+
R5F74,AM,50.93693694,7.277145275,168.0
102+
RB99F,AM,50.95495495,7.166330586,200.0
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R79BC,AM,50.16216216,7.889410246,370.0
104+
R00A4,AM,51.03603604,5.845722394,31.0
105+
RA538,AM,51.03603604,5.845709777,31.0
106+
RFA17,AM,50.67567568,7.066202715,164.0
107+
R942F,AM,51.4954955,7.439029882,104.0
108+
R28DF,AM,50.51351351,7.282807997,63.0
109+
R3B38,AM,50.15315315,8.015793865,501.0
110+
R653E,AM,50.32432432,7.211084891,246.0
111+
R1055,AM,50.11711712,8.008776126,452.0
112+
R71C2,AM,51.33333333,6.53300399,43.0
113+
R898A,AM,51.34234234,5.43813383,26.0
114+
R21A2,AM,51.43243243,7.54407332,128.0
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R5CF8,AM,50.1981982,5.573625888,299.0
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R8795,AM,50.75675676,6.978268798,102.0
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R5D58,AM,50.86486486,6.109977567,142.0
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R4C26,AM,50.82882883,6.076317602,180.0
119+
R5B44,AM,50.56756757,6.213571534,100.0
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REE4E,AM,50.91891892,7.274501559,108.0
121+
R6250,AM,51.0,7.202025424,180.0
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R9335,AM,50.7027027,6.159354023,265.0
123+
R81B0,AM,50.74774775,7.147928079,68.0
124+
R6FAF,AM,50.40540541,6.361374134,684.0
125+
GWBC,HS,50.3926,8.2687,197.0
126+
GWBD,HS,50.114,7.9021,428.0
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GWBE,HS,50.1064,8.1804,272.0
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GWBO,HS,49.936,7.9876,286.0
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WBFO,HS,50.5745,8.4227,211.0

‎README

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###############################################################################
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############################### BENSPY ########################################
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Set of python scripts for managing seismic data and resources of the Bensberg
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Earthquake Observatory of the University of Cologne
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###############################################################################
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INITIAL CONSIDERATIONS:
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0.0 This README file contains the steps for installing and running the Benspy package in Linux machine only.
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0.1 All the Bensberg python scripts (Benspy package) are stored in the following directory:
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/mnt/Station/scripts/benspy
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The idea of this README file is to configure your machine to run it directly from there.
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This way, any changes to the code will be done just once.
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If you want to do modifications to the scripts, please make a local copy of it and configure accordingly.
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0.2 Because we work over the network, you need to mount the NAS directories, which are expected to be mounted in the /mnt directory. The netConnect script should do this easily.
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In particular, please be sure you have the following directories already mounted:
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/mnt/Station
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/mnt/SC-Share
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/mnt/ACQ
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/mnt/SeisAn
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/mnt/Projects
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0.3 The requirements for running the Benspy scripts are:
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- Python3.8
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- py3seismo environment (and all the python packages there, see below)
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- dos2unix package (sudo apt install dos2unix)
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- java (optional, but really needed for benspy_metadata) >> sudo apt install dos2unix openjdk-11-jdk
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0.4 Due to the standarization, the Benspy scripts run with the same shebang: /home/seismo/venvs/py3seismo/bin/python
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Therefore, the username of your machine MUST be seismo and the virtual environment has to be installed under venvs directory.
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################ INSTALLATION PY3SEISMO VIRTUAL ENVIRONMENT ####################
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1.1 Create a virtual environment directory: /home/seismo/venvs
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> mkdir /home/seismo/venvs
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1.2 Create the py3seismo virtual environment using the python commands:
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> python3 -m venv /home/seismo/venvs/py3seismo (check that the python3 is python3.8 version)
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** For this, you need to have installed python3.8-venv (can be 3.10 or any other version)
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1.3 Activate the py3seismo venv by sourcing the activate binary:
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> source /home/seismo/venvs/py3seismo/bin/activate
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1.4 Once this is done, you will be working inside the virtual environment. Now, you need to install all the required packages.
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To do this, please use the requirements file under the Benspy directory:
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> pip install -r /mnt/Station/scripts/benspy/requirements_py3seismo_20221205.txt
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1.5 Once these packages are installed, you can deactivate the environment by commanding:
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> deactivate
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##### RUNNING BENSPY SCRIPTS ######
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2.1 In order to run the Benspy scripts anywhere from the terminal, you have to
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include the Benspy directory to your PATH and PYTHONPATH, so you have to modify
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your .bashrc (~/.bashrc) file with your favourite text editor
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and just copy & paste these lines at the end of the file.
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## Benspy
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alias py3='source /home/seismo/venvs/py3seismo/bin/activate'
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benspydir='/mnt/Station/scripts/benspy'
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export PYTHONPATH=${PYTHONPATH}:${benspydir}
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export PATH=${PATH}:${benspydir}
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2.2 Source your ~/.bashrc file (or close and open a new terminal/tab instead):
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> source ~/.bashrc
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2.3 In order to properly run the unix2dos function and create the drum files (benspy_createdrums.py or benspy_extdrums.py),
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you might have to give sudo permissions to unix2dos. To do this, type in the terminal:
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> sudo visudo (will ask for the sudo password and open the /etc/sudoers file)
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Add the following line at the end of the file.
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seismo ALL=(ALL) NOPASSWD: /usr/bin/unix2dos
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############
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Now you should be able to run all the python scripts from the terminal! ;-)
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You can run benspy_info (simple bash script) to get an overview of all the benspy scripts and their purposes. You will get the following output:
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The following scripts are part of the Benspy package and should be ready to run in your machine:
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> benspy_availability: Create availability plots for custom stations/networks.
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> benspy_checkgaps: Check for gaps in 2-min files due to corrupted data.
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> benspy_createdrums: Create daily drums for custom stations.
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> benspy_drum2wave: Get waveforms of Bensberg stations based on drum_select files.
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> benspy_drumplots: Create PNG files to be shown at Bensberg website.
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> benspy_extdrums.py: Create daily drums for non-Bensberg stations.
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> benspy_extwaves.py: Get waveforms of non-Bensberg stations based on drum_select files.
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> benspy_gdarchive.py: Archive GD waveforms.
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> benspy_getwaves.py: Get waveforms based on custom starting and ending times, for custom stations.
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> benspy_metadata.py: Update and download metadata from SMP.
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> benspy_ppsd.py: Create PPSDs figures and curves for custom stations/channels and times.
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> benspy_soh.py: Create state-of-health figures for Seedlink stations.
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> benspy_toarchive.py: Archive 2-min files to SDSarchive.
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Should you have any questions, suggestions, comments, etc, don't hesitate to let me know, please.
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Sebastian

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