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docs: minor edits to make text clearer
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docs/user-guide/data-reduction.md

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# Focused reflectometry data reduction
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The goal of the reflectometry data reduction is to compute the sample reflectivity $R(Q)$ as a function of the momentum transfer $Q$.
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The goal of the reflectometry data reduction is to compute the reflectivity $R(Q)$ of the sample as a function of the momentum transfer $Q$.
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Based on [J. Stahn, A. Glavic, Focusing neutron reflectometry: Implementation and experience on the TOF-reflectometer Amor](#reference).
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## Preliminaries
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The detector data consists of a list $EV$ of neutron detector events.
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For each neutron event in the list we know its wavelength $\lambda$ and the pixel number $j$ of the detector pixel that it hit.
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The detector data consists of a list $EV$ of detected neutron events.
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Lets say that for each event in the list we know its wavelength $\lambda$ and the pixel number $j$ of the detector pixel that it hit.
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The detector pixel positions are known and so is the position and the orientation of the sample.
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From this information we can compute the reflection angle $\theta$, and the momentum transfer $Q$ caused by the interaction with the sample.
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The purpose of this text is not to describe how the event coordinates $Q$ and $\theta$ are derived from the raw event data and the geometry information, so for now just take those relations for given.
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The purpose of this text is not to describe how the event coordinates wavelengt, $Q$ and $\theta$ are derived from the raw detector data and the instrument geometry, so for now just take those for given.
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For more details see the implementations for the respective instruments [Amor] and [Estia].
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To simplify the description it is assumed that the sample- and reference measurements were made over the same length of time, and it is assumed the neutron intensity from the source did not vary between the two measurements.
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To simplify the description it is assumed that the sample- and reference measurements were made over the same length of time, and it is assumed the brightness of the source did not change between the measurements.
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## Model of event intensity in the detector
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$$ (model)
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where $I_{\text{sam}}(\lambda, j)$ represents the expected number of neutrons detected in the $j$ pixel of the detector per unit of wavelength at the wavelength value $\lambda$. $I_{\text{ideal}}$ represents the expected number of neutrons detected if the sample was a perfect reflector and large enough so that the footprint of the focused beam on the sample was small compared to the sample. $F(\theta, w)$ is the fraction of the beam that hits the sample. It depends on the incidence angle $\theta$ and on the size of the sample represented by $w,$ and $\mu_{\text{sam}}$ is the sample rotation.
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The model does not hold for any $\lambda,j$. To make this explicit, let $M_{sam}$ represent the region of $\lambda,j$ where the model is expected to hold.
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The model does not hold for any $\lambda,j$. For example, there might be a region in the detector where we can see part of the direct beam. To make this explicit, let $M_{sam}$ represent the region of $\lambda,j$ where the model is expected to hold (the "region of interest").
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The ideal intensity is estimated from a reference measurement on a neutron supermirror.
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How it is computed will be described later, for now assume it is known.
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The ideal intensity $I_{ideal}$ will be estimated from a reference measurement on a neutron supermirror.
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How that is done will be described in more detail later, for now assume it is a known quantity.
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## Estimating $R(Q)$
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Move $F$ to the left-hand-side of equation {eq}`model` and integrate over all $\lambda, j\in M$ contributing to the $Q$-bin $[q_{i}, q_{i+1}]$
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$$
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for $Q_{i+\frac{1}{2}} \in [q_{i}, q_{i+1}]$.
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For the integral to make sense $M\sub M_{sam}$, but there might be other constraints limiting $M$ more, for now we leave it undefined.
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For the integral to make sense the region of interest $M$ has to be contained in the region where {eq}`model` holds, $M\sub M_{sam}$, but there might be other constraints limiting the region of interest $M$ even more, so it is left undefined for now.
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## The reference intensity $I_{\text{ideal}}$
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## Estimating intensities from detector counts
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The number of neutron counts in the detector is a Poisson process where the expected number of neutrons per pixel and unit of wavelength are the measurement intensities $I_{sam}$ and $I_{ref}$ defined above.
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The expected number of counts can be estimated by the empirically observed count:
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The expected intensity can be estimated by the measured intensity:
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$$
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I_{measured}(Q_{i+\frac{1}{2}}) = \int_{M\cap Q(\lambda, \theta(\lambda, j, \mu_{\text{sam}})) \in [q_{i}, q_{i+1}]} \frac{I_{\text{sam}}(\lambda, j)}{F(\theta(\lambda, j, \mu_{\text{sam}}), w_{\text{sam}})} d\lambda \ dj = \\
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\approx

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