ValueError: Transformation to global not found in element

[sunshx-bioinfo]

Hi， I get an error when I use spatialdata==0.3.0 and spatialdata-plot==0.2.9 to plot Shapes with method=="datashader", but method=="matplotlib" is ok! Here is my code:

I don't know whether it's a bug for latest version.

[LucaMarconato]

Hi @sunshx-bioinfo, you can pass coordinate_systems='pixel' to pl.show(), which should address your issue; but I agree, the default behavior with a single coordinate system should to use the only available one. CC @timtreis

[sunshx-bioinfo]

Hi, i tried it, but it didn't work.

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---- Replied Message ---- | From | ***@***.***> | | Date | 01/22/2025 18:05 | | To | ***@***.***> | | Cc | ***@***.***>***@***.***> | | Subject | Re: [scverse/spatialdata-plot] ValueError: Transformation to global not found in element (Issue #410) | Hi @sunshx-bioinfo, you can pass coordinate_systems='pixel' to pl.show(), which should address your issue; but I agree, the default behavior with a single coordinate system should to use the only available one. CC @timtreis — Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you were mentioned.Message ID: ***@***.***>

[LucaMarconato]

Which error did you get? Please try also with coordinate_systems=['pixel'].

[sunshx-bioinfo]

Hi，there isn't 'pixel' in my 'coordinate systems', it's 'pixels' :

so i passed coordinate_systems=='pixels' and coordinate_systems==['pixels'] to pl.show(), but both of them didn't work, the error is same as before:

[LucaMarconato]

Thanks for sharing the extra details. CC @timtreis