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stefanks
authored
Merge pull request #218 from smith-chem-wisc/StefanBranch
Stefan branch
2 parents 10edb28 + 4cb5bdf commit e3ad0bc

16 files changed

+114
-115
lines changed

‎CMD/CMD.csproj

+21-19
Original file line numberDiff line numberDiff line change
@@ -35,40 +35,40 @@
3535
<TreatWarningsAsErrors>true</TreatWarningsAsErrors>
3636
</PropertyGroup>
3737
<ItemGroup>
38-
<Reference Include="Chemistry, Version=1.0.93.0, Culture=neutral, processorArchitecture=AMD64">
39-
<HintPath>..\packages\mzLib.1.0.93\lib\Chemistry.dll</HintPath>
38+
<Reference Include="Chemistry, Version=1.0.94.0, Culture=neutral, processorArchitecture=AMD64">
39+
<HintPath>..\packages\mzLib.1.0.94\lib\Chemistry.dll</HintPath>
4040
<Private>True</Private>
4141
</Reference>
42-
<Reference Include="MassSpectrometry, Version=1.0.93.0, Culture=neutral, processorArchitecture=AMD64">
43-
<HintPath>..\packages\mzLib.1.0.93\lib\MassSpectrometry.dll</HintPath>
42+
<Reference Include="MassSpectrometry, Version=1.0.94.0, Culture=neutral, processorArchitecture=AMD64">
43+
<HintPath>..\packages\mzLib.1.0.94\lib\MassSpectrometry.dll</HintPath>
4444
<Private>True</Private>
4545
</Reference>
4646
<Reference Include="MathNet.Numerics, Version=3.17.0.0, Culture=neutral, processorArchitecture=MSIL">
4747
<HintPath>..\packages\MathNet.Numerics.3.17.0\lib\net40\MathNet.Numerics.dll</HintPath>
4848
<Private>True</Private>
4949
</Reference>
50-
<Reference Include="mzIdentML, Version=1.0.93.0, Culture=neutral, processorArchitecture=AMD64">
51-
<HintPath>..\packages\mzLib.1.0.93\lib\mzIdentML.dll</HintPath>
50+
<Reference Include="mzIdentML, Version=1.0.94.0, Culture=neutral, processorArchitecture=AMD64">
51+
<HintPath>..\packages\mzLib.1.0.94\lib\mzIdentML.dll</HintPath>
5252
<Private>True</Private>
5353
</Reference>
54-
<Reference Include="MzLibUtil, Version=1.0.93.0, Culture=neutral, processorArchitecture=AMD64">
55-
<HintPath>..\packages\mzLib.1.0.93\lib\MzLibUtil.dll</HintPath>
54+
<Reference Include="MzLibUtil, Version=1.0.94.0, Culture=neutral, processorArchitecture=AMD64">
55+
<HintPath>..\packages\mzLib.1.0.94\lib\MzLibUtil.dll</HintPath>
5656
<Private>True</Private>
5757
</Reference>
58-
<Reference Include="MzML, Version=1.0.93.0, Culture=neutral, processorArchitecture=AMD64">
59-
<HintPath>..\packages\mzLib.1.0.93\lib\MzML.dll</HintPath>
58+
<Reference Include="MzML, Version=1.0.94.0, Culture=neutral, processorArchitecture=AMD64">
59+
<HintPath>..\packages\mzLib.1.0.94\lib\MzML.dll</HintPath>
6060
<Private>True</Private>
6161
</Reference>
6262
<Reference Include="NetSerializer, Version=4.1.0.0, Culture=neutral, processorArchitecture=MSIL">
6363
<HintPath>..\packages\NetSerializer.4.1.0\lib\net45\NetSerializer.dll</HintPath>
6464
<Private>True</Private>
6565
</Reference>
66-
<Reference Include="Proteomics, Version=1.0.93.0, Culture=neutral, processorArchitecture=AMD64">
67-
<HintPath>..\packages\mzLib.1.0.93\lib\Proteomics.dll</HintPath>
66+
<Reference Include="Proteomics, Version=1.0.94.0, Culture=neutral, processorArchitecture=AMD64">
67+
<HintPath>..\packages\mzLib.1.0.94\lib\Proteomics.dll</HintPath>
6868
<Private>True</Private>
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</Reference>
70-
<Reference Include="Spectra, Version=1.0.93.0, Culture=neutral, processorArchitecture=AMD64">
71-
<HintPath>..\packages\mzLib.1.0.93\lib\Spectra.dll</HintPath>
70+
<Reference Include="Spectra, Version=1.0.94.0, Culture=neutral, processorArchitecture=AMD64">
71+
<HintPath>..\packages\mzLib.1.0.94\lib\Spectra.dll</HintPath>
7272
<Private>True</Private>
7373
</Reference>
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<Reference Include="System" />
@@ -80,12 +80,12 @@
8080
<Reference Include="System.Data" />
8181
<Reference Include="System.Net.Http" />
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<Reference Include="System.Xml" />
83-
<Reference Include="Thermo, Version=1.0.93.0, Culture=neutral, processorArchitecture=AMD64">
84-
<HintPath>..\packages\mzLib.1.0.93\lib\Thermo.dll</HintPath>
83+
<Reference Include="Thermo, Version=1.0.94.0, Culture=neutral, processorArchitecture=AMD64">
84+
<HintPath>..\packages\mzLib.1.0.94\lib\Thermo.dll</HintPath>
8585
<Private>True</Private>
8686
</Reference>
87-
<Reference Include="UsefulProteomicsDatabases, Version=1.0.93.0, Culture=neutral, processorArchitecture=AMD64">
88-
<HintPath>..\packages\mzLib.1.0.93\lib\UsefulProteomicsDatabases.dll</HintPath>
87+
<Reference Include="UsefulProteomicsDatabases, Version=1.0.94.0, Culture=neutral, processorArchitecture=AMD64">
88+
<HintPath>..\packages\mzLib.1.0.94\lib\UsefulProteomicsDatabases.dll</HintPath>
8989
<Private>True</Private>
9090
</Reference>
9191
<Reference Include="Zlib.Portable, Version=1.11.0.0, Culture=neutral, processorArchitecture=MSIL">
@@ -101,7 +101,9 @@
101101
</ItemGroup>
102102
<ItemGroup>
103103
<None Include="App.config" />
104-
<None Include="packages.config" />
104+
<None Include="packages.config">
105+
<SubType>Designer</SubType>
106+
</None>
105107
</ItemGroup>
106108
<ItemGroup>
107109
<ProjectReference Include="..\TaskLayer\TaskLayer.csproj">

‎CMD/packages.config

+1-1
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@@ -1,7 +1,7 @@
11
<?xml version="1.0" encoding="utf-8"?>
22
<packages>
33
<package id="MathNet.Numerics" version="3.17.0" targetFramework="net451" />
4-
<package id="mzLib" version="1.0.93" targetFramework="net451" />
4+
<package id="mzLib" version="1.0.94" targetFramework="net451" />
55
<package id="NetSerializer" version="4.1.0" targetFramework="net451" />
66
<package id="Zlib.Portable" version="1.11.0" targetFramework="net451" />
77
</packages>

‎EngineLayer/Analysis/AnalysisEngine.cs

+1-1
Original file line numberDiff line numberDiff line change
@@ -968,7 +968,7 @@ private void AddObservedPeptidesToDictionary()
968968
var digestedList = protein.Digest(protease, maximumMissedCleavages, InitiatorMethionineBehavior.Variable, fixedModifications).ToList();
969969
foreach (var peptide in digestedList)
970970
{
971-
if (peptide.Length == 1 || peptide.Length > byte.MaxValue - 2) // 2 is for indexing terminal modifications
971+
if (peptide.Length <= 1) // 2 is for indexing terminal modifications
972972
continue;
973973

974974
var ListOfModifiedPeptides = peptide.GetPeptidesWithSetModifications(variableModifications, maxModIsoforms, max_mods_for_peptide).ToList();

‎EngineLayer/ClassicSearch/ClassicSearchEngine.cs

+1-3
Original file line numberDiff line numberDiff line change
@@ -1,6 +1,5 @@
11
using MzLibUtil;
22
using Proteomics;
3-
using Spectra;
43
using System;
54
using System.Collections.Concurrent;
65
using System.Collections.Generic;
@@ -98,8 +97,7 @@ protected override MyResults RunSpecific()
9897
var digestedList = protein.Digest(protease, maximumMissedCleavages, InitiatorMethionineBehavior.Variable, fixedModifications).ToList();
9998
foreach (var peptide in digestedList)
10099
{
101-
102-
if (peptide.Length == 1 || peptide.Length > byte.MaxValue - 2)
100+
if (peptide.Length <= 1)
103101
continue;
104102

105103
if (peptide.numLocMods == 0)

‎EngineLayer/EngineLayer.csproj

+20-19
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@@ -34,36 +34,36 @@
3434
<TreatWarningsAsErrors>true</TreatWarningsAsErrors>
3535
</PropertyGroup>
3636
<ItemGroup>
37-
<Reference Include="Chemistry, Version=1.0.93.0, Culture=neutral, processorArchitecture=AMD64">
38-
<HintPath>..\packages\mzLib.1.0.93\lib\Chemistry.dll</HintPath>
37+
<Reference Include="Chemistry, Version=1.0.94.0, Culture=neutral, processorArchitecture=AMD64">
38+
<HintPath>..\packages\mzLib.1.0.94\lib\Chemistry.dll</HintPath>
3939
<Private>True</Private>
4040
</Reference>
41-
<Reference Include="MassSpectrometry, Version=1.0.93.0, Culture=neutral, processorArchitecture=AMD64">
42-
<HintPath>..\packages\mzLib.1.0.93\lib\MassSpectrometry.dll</HintPath>
41+
<Reference Include="MassSpectrometry, Version=1.0.94.0, Culture=neutral, processorArchitecture=AMD64">
42+
<HintPath>..\packages\mzLib.1.0.94\lib\MassSpectrometry.dll</HintPath>
4343
<Private>True</Private>
4444
</Reference>
4545
<Reference Include="MathNet.Numerics, Version=3.17.0.0, Culture=neutral, processorArchitecture=MSIL">
4646
<HintPath>..\packages\MathNet.Numerics.3.17.0\lib\net40\MathNet.Numerics.dll</HintPath>
4747
<Private>True</Private>
4848
</Reference>
49-
<Reference Include="mzIdentML, Version=1.0.93.0, Culture=neutral, processorArchitecture=AMD64">
50-
<HintPath>..\packages\mzLib.1.0.93\lib\mzIdentML.dll</HintPath>
49+
<Reference Include="mzIdentML, Version=1.0.94.0, Culture=neutral, processorArchitecture=AMD64">
50+
<HintPath>..\packages\mzLib.1.0.94\lib\mzIdentML.dll</HintPath>
5151
<Private>True</Private>
5252
</Reference>
53-
<Reference Include="MzLibUtil, Version=1.0.93.0, Culture=neutral, processorArchitecture=AMD64">
54-
<HintPath>..\packages\mzLib.1.0.93\lib\MzLibUtil.dll</HintPath>
53+
<Reference Include="MzLibUtil, Version=1.0.94.0, Culture=neutral, processorArchitecture=AMD64">
54+
<HintPath>..\packages\mzLib.1.0.94\lib\MzLibUtil.dll</HintPath>
5555
<Private>True</Private>
5656
</Reference>
57-
<Reference Include="MzML, Version=1.0.93.0, Culture=neutral, processorArchitecture=AMD64">
58-
<HintPath>..\packages\mzLib.1.0.93\lib\MzML.dll</HintPath>
57+
<Reference Include="MzML, Version=1.0.94.0, Culture=neutral, processorArchitecture=AMD64">
58+
<HintPath>..\packages\mzLib.1.0.94\lib\MzML.dll</HintPath>
5959
<Private>True</Private>
6060
</Reference>
61-
<Reference Include="Proteomics, Version=1.0.93.0, Culture=neutral, processorArchitecture=AMD64">
62-
<HintPath>..\packages\mzLib.1.0.93\lib\Proteomics.dll</HintPath>
61+
<Reference Include="Proteomics, Version=1.0.94.0, Culture=neutral, processorArchitecture=AMD64">
62+
<HintPath>..\packages\mzLib.1.0.94\lib\Proteomics.dll</HintPath>
6363
<Private>True</Private>
6464
</Reference>
65-
<Reference Include="Spectra, Version=1.0.93.0, Culture=neutral, processorArchitecture=AMD64">
66-
<HintPath>..\packages\mzLib.1.0.93\lib\Spectra.dll</HintPath>
65+
<Reference Include="Spectra, Version=1.0.94.0, Culture=neutral, processorArchitecture=AMD64">
66+
<HintPath>..\packages\mzLib.1.0.94\lib\Spectra.dll</HintPath>
6767
<Private>True</Private>
6868
</Reference>
6969
<Reference Include="System" />
@@ -74,12 +74,12 @@
7474
<Reference Include="System.Data" />
7575
<Reference Include="System.Net.Http" />
7676
<Reference Include="System.Xml" />
77-
<Reference Include="Thermo, Version=1.0.93.0, Culture=neutral, processorArchitecture=AMD64">
78-
<HintPath>..\packages\mzLib.1.0.93\lib\Thermo.dll</HintPath>
77+
<Reference Include="Thermo, Version=1.0.94.0, Culture=neutral, processorArchitecture=AMD64">
78+
<HintPath>..\packages\mzLib.1.0.94\lib\Thermo.dll</HintPath>
7979
<Private>True</Private>
8080
</Reference>
81-
<Reference Include="UsefulProteomicsDatabases, Version=1.0.93.0, Culture=neutral, processorArchitecture=AMD64">
82-
<HintPath>..\packages\mzLib.1.0.93\lib\UsefulProteomicsDatabases.dll</HintPath>
81+
<Reference Include="UsefulProteomicsDatabases, Version=1.0.94.0, Culture=neutral, processorArchitecture=AMD64">
82+
<HintPath>..\packages\mzLib.1.0.94\lib\UsefulProteomicsDatabases.dll</HintPath>
8383
<Private>True</Private>
8484
</Reference>
8585
<Reference Include="Zlib.Portable, Version=1.11.0.0, Culture=neutral, processorArchitecture=MSIL">
@@ -167,6 +167,7 @@
167167
</Content>
168168
<Content Include="Data\unimod.xml">
169169
<CopyToOutputDirectory>Always</CopyToOutputDirectory>
170+
<SonarQubeExclude>true</SonarQubeExclude>
170171
</Content>
171172
<Content Include="Mods\f.txt">
172173
<CopyToOutputDirectory>Always</CopyToOutputDirectory>
@@ -198,4 +199,4 @@
198199
<Target Name="AfterBuild">
199200
</Target>
200201
-->
201-
</Project>
202+
</Project>

‎EngineLayer/Indexing/IndexingEngine.cs

+1-1
Original file line numberDiff line numberDiff line change
@@ -87,7 +87,7 @@ protected override MyResults RunSpecific()
8787
var digestedList = protein.Digest(protease, maximumMissedCleavages, initiatorMethionineBehavior, fixedModifications).ToList();
8888
foreach (var peptide in digestedList)
8989
{
90-
if (peptide.Length == 1 || peptide.Length > byte.MaxValue - 2)
90+
if (peptide.Length <= 1)
9191
continue;
9292

9393
if (peptide.numLocMods == 0)

‎EngineLayer/Mods/m.txt

+2-3
Original file line numberDiff line numberDiff line change
@@ -196,19 +196,18 @@ PP Anywhere.
196196
MM 31.989829
197197
CF O2
198198
//
199-
ID Acetylation of Lysine
199+
ID Acetylation
200200
FT MOD_RES
201201
TG Lysine
202202
PP Anywhere.
203203
MM 42.010565
204204
CF H2 C2 O1
205205
//
206-
ID Acetylation of protein N-terminus
206+
ID Acetylation
207207
FT MOD_RES
208208
TG Any
209209
PP N-terminal.
210210
MM 42.010565
211-
AL 26.01565
212211
CF H2 C2 O1
213212
//
214213
ID TriMethylation of K

‎EngineLayer/Mods/metals.txt

-1
Original file line numberDiff line numberDiff line change
@@ -4,7 +4,6 @@ FT MOD_RES
44
TG D or E
55
PP Anywhere.
66
MM 21.981943
7-
AL 5.987028
87
CF H-1 Na1
98
//
109
ID Calcium

‎EngineLayer/Proteomics/CompactPeptide.cs

+9-9
Original file line numberDiff line numberDiff line change
@@ -13,11 +13,11 @@ public class CompactPeptide
1313

1414
public readonly byte[] BaseSequence;
1515
public readonly ushort varMod1Type;
16-
public readonly byte varMod1Loc;
16+
public readonly ushort varMod1Loc;
1717
public readonly ushort varMod2Type;
18-
public readonly byte varMod2Loc;
18+
public readonly ushort varMod2Loc;
1919
public readonly ushort varMod3Type;
20-
public readonly byte varMod3Loc;
20+
public readonly ushort varMod3Loc;
2121
public float MonoisotopicMassIncludingFixedMods;
2222

2323
#endregion Public Fields
@@ -43,15 +43,15 @@ public CompactPeptide(PeptideWithSetModifications yyy, List<ModificationWithMass
4343
if (variableModifications.Contains(mod))
4444
{
4545
varMod1Type = (ushort)(variableModifications.IndexOf(mod) + 1);
46-
varMod1Loc = (byte)oneBasedLoc;
46+
varMod1Loc = (ushort)oneBasedLoc;
4747
}
4848
else if (fixedModifications.Contains(mod))
4949
{
5050
}
5151
else
5252
{
5353
varMod1Type = (ushort)(32767 + localizeableModifications.IndexOf(mod) + 1);
54-
varMod1Loc = (byte)oneBasedLoc;
54+
varMod1Loc = (ushort)oneBasedLoc;
5555
}
5656
}
5757
else if (varMod2Type == 0)
@@ -60,15 +60,15 @@ public CompactPeptide(PeptideWithSetModifications yyy, List<ModificationWithMass
6060
if (variableModifications.Contains(mod))
6161
{
6262
varMod2Type = (ushort)(variableModifications.IndexOf(mod) + 1);
63-
varMod2Loc = (byte)oneBasedLoc;
63+
varMod2Loc = (ushort)oneBasedLoc;
6464
}
6565
else if (fixedModifications.Contains(mod))
6666
{
6767
}
6868
else
6969
{
7070
varMod2Type = (ushort)(32767 + localizeableModifications.IndexOf(mod) + 1);
71-
varMod2Loc = (byte)oneBasedLoc;
71+
varMod2Loc = (ushort)oneBasedLoc;
7272
}
7373
}
7474
else
@@ -77,15 +77,15 @@ public CompactPeptide(PeptideWithSetModifications yyy, List<ModificationWithMass
7777
if (variableModifications.Contains(mod))
7878
{
7979
varMod3Type = (ushort)(variableModifications.IndexOf(mod) + 1);
80-
varMod3Loc = (byte)oneBasedLoc;
80+
varMod3Loc = (ushort)oneBasedLoc;
8181
}
8282
else if (fixedModifications.Contains(mod))
8383
{
8484
}
8585
else
8686
{
8787
varMod3Type = (ushort)(32767 + localizeableModifications.IndexOf(mod) + 1);
88-
varMod3Loc = (byte)oneBasedLoc;
88+
varMod3Loc = (ushort)oneBasedLoc;
8989
}
9090
}
9191
}

‎EngineLayer/packages.config

+1-1
Original file line numberDiff line numberDiff line change
@@ -1,6 +1,6 @@
11
<?xml version="1.0" encoding="utf-8"?>
22
<packages>
33
<package id="MathNet.Numerics" version="3.17.0" targetFramework="net451" />
4-
<package id="mzLib" version="1.0.93" targetFramework="net451" />
4+
<package id="mzLib" version="1.0.94" targetFramework="net451" />
55
<package id="Zlib.Portable" version="1.11.0" targetFramework="net451" />
66
</packages>

‎GUI/GUI.csproj

+18-18
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@@ -37,36 +37,36 @@
3737
<TreatWarningsAsErrors>true</TreatWarningsAsErrors>
3838
</PropertyGroup>
3939
<ItemGroup>
40-
<Reference Include="Chemistry, Version=1.0.93.0, Culture=neutral, processorArchitecture=AMD64">
41-
<HintPath>..\packages\mzLib.1.0.93\lib\Chemistry.dll</HintPath>
40+
<Reference Include="Chemistry, Version=1.0.94.0, Culture=neutral, processorArchitecture=AMD64">
41+
<HintPath>..\packages\mzLib.1.0.94\lib\Chemistry.dll</HintPath>
4242
<Private>True</Private>
4343
</Reference>
44-
<Reference Include="MassSpectrometry, Version=1.0.93.0, Culture=neutral, processorArchitecture=AMD64">
45-
<HintPath>..\packages\mzLib.1.0.93\lib\MassSpectrometry.dll</HintPath>
44+
<Reference Include="MassSpectrometry, Version=1.0.94.0, Culture=neutral, processorArchitecture=AMD64">
45+
<HintPath>..\packages\mzLib.1.0.94\lib\MassSpectrometry.dll</HintPath>
4646
<Private>True</Private>
4747
</Reference>
4848
<Reference Include="MathNet.Numerics, Version=3.17.0.0, Culture=neutral, processorArchitecture=MSIL">
4949
<HintPath>..\packages\MathNet.Numerics.3.17.0\lib\net40\MathNet.Numerics.dll</HintPath>
5050
<Private>True</Private>
5151
</Reference>
52-
<Reference Include="mzIdentML, Version=1.0.93.0, Culture=neutral, processorArchitecture=AMD64">
53-
<HintPath>..\packages\mzLib.1.0.93\lib\mzIdentML.dll</HintPath>
52+
<Reference Include="mzIdentML, Version=1.0.94.0, Culture=neutral, processorArchitecture=AMD64">
53+
<HintPath>..\packages\mzLib.1.0.94\lib\mzIdentML.dll</HintPath>
5454
<Private>True</Private>
5555
</Reference>
56-
<Reference Include="MzLibUtil, Version=1.0.93.0, Culture=neutral, processorArchitecture=AMD64">
57-
<HintPath>..\packages\mzLib.1.0.93\lib\MzLibUtil.dll</HintPath>
56+
<Reference Include="MzLibUtil, Version=1.0.94.0, Culture=neutral, processorArchitecture=AMD64">
57+
<HintPath>..\packages\mzLib.1.0.94\lib\MzLibUtil.dll</HintPath>
5858
<Private>True</Private>
5959
</Reference>
60-
<Reference Include="MzML, Version=1.0.93.0, Culture=neutral, processorArchitecture=AMD64">
61-
<HintPath>..\packages\mzLib.1.0.93\lib\MzML.dll</HintPath>
60+
<Reference Include="MzML, Version=1.0.94.0, Culture=neutral, processorArchitecture=AMD64">
61+
<HintPath>..\packages\mzLib.1.0.94\lib\MzML.dll</HintPath>
6262
<Private>True</Private>
6363
</Reference>
64-
<Reference Include="Proteomics, Version=1.0.93.0, Culture=neutral, processorArchitecture=AMD64">
65-
<HintPath>..\packages\mzLib.1.0.93\lib\Proteomics.dll</HintPath>
64+
<Reference Include="Proteomics, Version=1.0.94.0, Culture=neutral, processorArchitecture=AMD64">
65+
<HintPath>..\packages\mzLib.1.0.94\lib\Proteomics.dll</HintPath>
6666
<Private>True</Private>
6767
</Reference>
68-
<Reference Include="Spectra, Version=1.0.93.0, Culture=neutral, processorArchitecture=AMD64">
69-
<HintPath>..\packages\mzLib.1.0.93\lib\Spectra.dll</HintPath>
68+
<Reference Include="Spectra, Version=1.0.94.0, Culture=neutral, processorArchitecture=AMD64">
69+
<HintPath>..\packages\mzLib.1.0.94\lib\Spectra.dll</HintPath>
7070
<Private>True</Private>
7171
</Reference>
7272
<Reference Include="System" />
@@ -81,12 +81,12 @@
8181
<Reference Include="System.Xaml">
8282
<RequiredTargetFramework>4.0</RequiredTargetFramework>
8383
</Reference>
84-
<Reference Include="Thermo, Version=1.0.93.0, Culture=neutral, processorArchitecture=AMD64">
85-
<HintPath>..\packages\mzLib.1.0.93\lib\Thermo.dll</HintPath>
84+
<Reference Include="Thermo, Version=1.0.94.0, Culture=neutral, processorArchitecture=AMD64">
85+
<HintPath>..\packages\mzLib.1.0.94\lib\Thermo.dll</HintPath>
8686
<Private>True</Private>
8787
</Reference>
88-
<Reference Include="UsefulProteomicsDatabases, Version=1.0.93.0, Culture=neutral, processorArchitecture=AMD64">
89-
<HintPath>..\packages\mzLib.1.0.93\lib\UsefulProteomicsDatabases.dll</HintPath>
88+
<Reference Include="UsefulProteomicsDatabases, Version=1.0.94.0, Culture=neutral, processorArchitecture=AMD64">
89+
<HintPath>..\packages\mzLib.1.0.94\lib\UsefulProteomicsDatabases.dll</HintPath>
9090
<Private>True</Private>
9191
</Reference>
9292
<Reference Include="WindowsBase" />

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