Merge branch 'devel' into euler-sph-normalization-clean

Author: aminrai2000

.github/actions/install/struphy_in_container/action.yml

@@ -22,5 +22,4 @@ runs:
           git pull
           source env_c_/bin/activate
           which python3
-          struphy -p
           pip install -e ".[phys,mpi,doc]"

.github/actions/tests/quickstart/action.yml

@@ -6,7 +6,6 @@ runs:
     - name: Run quickstart
       shell: bash
       run: |
-        struphy -p
         struphy -h
         struphy params VlasovAmpereOneSpecies 
         ls -1a

.github/workflows/docs.yml

@@ -45,11 +45,6 @@ jobs:
           restore-keys: |
             ${{ runner.os }}-pip-
 
-      - name: Install pandoc
-        run: |
-          sudo apt update -y
-          sudo apt install -y pandoc
-
       - name: Install prerequisites (Ubuntu)
         uses: ./.github/actions/install/ubuntu-latest
         env:
@@ -62,12 +57,6 @@ jobs:
         with:
           optional-deps: 'dev,doc'
 
-      - name: Compile Struphy
-        shell: bash
-        run: |
-          struphy compile --status
-          struphy compile -y
-
       - name: Build Sphinx docs
         run: |
           cd doc

.github/workflows/macos-latest.yml

@@ -1,4 +1,5 @@
-# name: MacOS
+name: MacOS
+
 on:
   push:
     branches:
@@ -9,9 +10,9 @@ on:
       - main
       - devel
 
-# concurrency:
-#   group: ${{ github.ref }}
-#   cancel-in-progress: true
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
 
 jobs:
   macos-latest-build:

.github/workflows/static_analysis.yml

@@ -10,9 +10,10 @@ on:
       - main
       - devel
 
-# concurrency:
-#   group: ${{ github.ref }}
-#   cancel-in-progress: true
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+
 defaults:
   run:
     shell: bash

.github/workflows/test-PR-models.yml

@@ -7,17 +7,17 @@ on:
       - devel
   workflow_dispatch:
 
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+
 defaults:
   run:
     shell: bash
 
 permissions:
   contents: read
 
-# concurrency:
-#   group: "pages"
-#   cancel-in-progress: false
-
 jobs:
   model-tests-in-container-with-struphy:
     runs-on: ubuntu-latest

.github/workflows/test-PR-unit.yml

@@ -7,17 +7,17 @@ on:
       - devel
   workflow_dispatch:
 
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+
 defaults:
   run:
     shell: bash
 
 permissions:
   contents: read
 
-# concurrency:
-#   group: "pages"
-#   cancel-in-progress: false
-
 jobs:
   unit-tests-in-container-with-struphy:
     runs-on: ubuntu-latest

.github/workflows/ubuntu-latest.yml

@@ -1,4 +1,4 @@
-name: Ubuntu latest - cronjob
+name: Ubuntu
 on:
   schedule:
     # run at 1 a.m. on Sunday

.gitlab-ci.yml

@@ -397,7 +397,6 @@ stages:
     - pip install -U build
     - python3 -m build
   inspect_struphy:
-    - struphy -p
     - struphy -h
     - struphy --refresh-models
     - struphy run -h
@@ -424,7 +423,6 @@ stages:
     - struphy test verification --mpi 4 --nclones 2
     - struphy test VlasovAmpereOneSpecies --mpi 2 --nclones 2
   quickstart_tests:
-    - struphy -p
     - struphy -h
     - struphy params VlasovAmpereOneSpecies 
     - ls -1a

README.md

@@ -2,14 +2,17 @@
 <img src="https://raw.githubusercontent.com/struphy-hub/.github/refs/heads/main/profile/struphy_header_with_subs.png">
 </h1><br>
 
+[![Release](https://img.shields.io/github/v/release/struphy-hub/struphy?label=Release)](https://github.com/struphy-hub/struphy/releases)
+[![License](https://img.shields.io/badge/License-MIT-violet)](https://github.com/struphy-hub/struphy/blob/devel/LICENSE)
+[![badge](https://img.shields.io/badge/launch-tutorials-579ACA.svg?logo=data:image/png;base64,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)](https://mybinder.org/v2/gh/struphy-hub/struphy-tutorials/main)
 [![Ubuntu latest](https://github.com/struphy-hub/struphy/actions/workflows/ubuntu-latest.yml/badge.svg)](https://github.com/struphy-hub/struphy/actions/workflows/ubuntu-latest.yml)
 [![MacOS latest](https://github.com/struphy-hub/struphy/actions/workflows/macos-latest.yml/badge.svg)](https://github.com/struphy-hub/struphy/actions/workflows/macos-latest.yml)
 [![isort and ruff](https://github.com/struphy-hub/struphy/actions/workflows/static_analysis.yml/badge.svg)](https://github.com/struphy-hub/struphy/actions/workflows/static_analysis.yml)
 [![PyPI](https://img.shields.io/pypi/v/struphy?label=PyPI)](https://pypi.org/project/struphy/)
 [![PyPI Downloads](https://img.shields.io/pypi/dm/struphy.svg?label=PyPI%20downloads)](
 https://pypi.org/project/struphy/)
-[![Release](https://img.shields.io/github/v/release/struphy-hub/struphy?label=Release)](https://github.com/struphy-hub/struphy/releases)
-[![License](https://img.shields.io/badge/License-MIT-violet)](https://github.com/struphy-hub/struphy/blob/devel/LICENSE)
+
+
 
 # Welcome!
 
@@ -27,9 +30,9 @@ All models can be run on multiple cores through MPI (distributed memory) and Ope
 
 Particles in a Tokamak <br> (model "Vlasov")             |  Toroidal Alfvén eigenmode <br> (model "LinearMHDDriftKineticCC") 
 :-------------------------:|:-------------------------:
-![](/doc/gallery/gallery_struphy_tracer6D.png)  |  ![](/doc/gallery/gallery_frontpage_bk.png) 
+![](https://raw.githubusercontent.com/struphy-hub/.github/refs/heads/main/profile/gallery_struphy_tracer6D.png)  |  ![](https://raw.githubusercontent.com/struphy-hub/.github/refs/heads/main/profile/gallery_frontpage_bk.png) 
 **Strong Landau damping <br>(model "VlasovAmpereOneSpecies")** | **Anisotropic diffusion <br> (propagator "ImplicitDiffusion")**
-![](/doc/gallery/gallery_step_1496.png) | ![](/doc/gallery/gallery_struphy_heat.png)
+![](https://raw.githubusercontent.com/struphy-hub/.github/refs/heads/main/profile/gallery_step_1496.png) | ![](https://raw.githubusercontent.com/struphy-hub/.github/refs/heads/main/profile/gallery_struphy_heat.png)
 
 
 The code is freely available under an [MIT license](https://github.com/struphy-hub/struphy/blob/devel/LICENSE) - Copyright (c) 2019-2025, Struphy developers, Max Planck Institute for Plasma Physics.