diff --git a/ChangeLog b/ChangeLog index 6f71cc4..9c2c709 100644 --- a/ChangeLog +++ b/ChangeLog @@ -1,3 +1,274 @@ +* 2023-09-07(Alan O'Callaghan) R cmd check notes |aa2e2bb| +| .Rbuildignore | 1 + +| R/heatmaply.R | 1 + +| README.md | 21 +++++++++++++-------- +| inst/CITATION | 8 +++----- +| man/heatmaply.Rd | 6 +++++- +| 5 files changed, 23 insertions(+), 14 deletions(-) + +* 2023-09-07(Alan O'Callaghan) Resolve #295 |17c5526| +| DESCRIPTION | 2 +- +| NEWS | 1 + +| R/heatmaply.R | 54 +++++++++++++++++++++++++++++------------------------- +| R/plots.R | 23 +++++++++++++---------- +| 4 files changed, 44 insertions(+), 36 deletions(-) + +* 2023-07-20(Alan O'Callaghan) Avoid expensive transpose |817b566| +| R/heatmapr.R | 15 ++++++++------- +| 1 file changed, 8 insertions(+), 7 deletions(-) + +* 2023-07-11(Alan O'Callaghan) Remove old docs |71458a2| +| docs/articles/heatmaply.html | 52 +- +| .../crosstalk-1.0.0/css/crosstalk.css | 27 - +| .../crosstalk-1.0.0/js/crosstalk.js | 1471 --- +| 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27 - +| .../crosstalk-1.0.0/js/crosstalk.js | 1471 --- +| .../crosstalk-1.0.0/js/crosstalk.js.map | 37 - +| .../crosstalk-1.0.0/js/crosstalk.min.js | 2 - +| .../crosstalk-1.0.0/js/crosstalk.min.js.map | 1 - +| .../htmlwidgets-1.5.1/htmlwidgets.js | 903 -- +| .../jquery-1.11.3/jquery-AUTHORS.txt | 217 - +| .../heatmaply_iris_files/jquery-1.11.3/jquery.js | 10351 ----------------- +| .../jquery-1.11.3/jquery.min.js | 5 - +| .../jquery-1.11.3/jquery.min.map | 1 - +| .../plotly-binding-4.9.1/plotly.js | 935 -- +| .../plotly-htmlwidgets.css | 9 - +| .../plotly-main-1.49.4/plotly-latest.min.js | 7 - +| .../typedarray-0.1/typedarray.min.js | 1 - +| docs/sitemap.xml | 3 - +| 55 files changed, 35 insertions(+), 44456 deletions(-) + +* 2023-07-11(Alan O'Callaghan) Document |f8c4bbb| +| .Rbuildignore | 1 + +| NEWS | 2 +- +| R/heatmaply.R | 8 +++++--- +| man/heatmaply.Rd | 11 ++++++++--- +| 4 files changed, 15 insertions(+), 7 deletions(-) + +* 2023-07-11(Alan O'Callaghan) Update pkgdown |6f67dcd| +| docs/404.html | 4 +- +| docs/CONDUCT.html | 5 +- +| docs/articles/heatmaply.html | 883 +++++------ +| .../crosstalk-1.2.0/css/crosstalk.min.css | 1 + +| .../crosstalk-1.2.0/js/crosstalk.js | 1474 +++++++++++++++++++ +| .../crosstalk-1.2.0/js/crosstalk.js.map | 37 + +| .../crosstalk-1.2.0/js/crosstalk.min.js | 2 + +| .../crosstalk-1.2.0/js/crosstalk.min.js.map | 1 + +| .../crosstalk-1.2.0/scss/crosstalk.scss | 75 + +| .../figure-html/unnamed-chunk-21-1.png | Bin 23280 -> 28473 bytes +| .../figure-html/unnamed-chunk-24-1.png | Bin 19635 -> 25759 bytes +| .../figure-html/unnamed-chunk-29-1.png | Bin 78976 -> 89695 bytes +| .../htmlwidgets-1.6.2/htmlwidgets.js | 901 ++++++++++++ +| .../plotly-binding-4.10.2/plotly.js | 941 ++++++++++++ +| .../plotly-htmlwidgets.css | 9 + +| .../plotly-main-2.11.1/plotly-latest.min.js | 69 + +| docs/articles/index.html | 109 +- +| docs/authors.html | 4 +- +| docs/index.html | 53 +- +| docs/news/index.html | 1128 +++++--------- +| docs/pkgdown.css | 83 +- +| docs/pkgdown.js | 4 +- +| docs/pkgdown.yml | 6 +- +| docs/reference/RColorBrewer_colors.html | 324 ++-- +| docs/reference/Rplot002.png | Bin 35438 -> 40671 bytes +| docs/reference/ggheatmap-1.png | Bin 131761 -> 136603 bytes +| docs/reference/ggheatmap.html | 188 +-- +| docs/reference/ggplot_side_color_plot.html | 218 +-- +| docs/reference/heatmaply.html | 1468 +++++++++--------- +| docs/reference/heatmapr.html | 628 ++++---- +| docs/reference/index.html | 172 +-- +| docs/reference/is.heatmapr.html | 134 +- +| docs/reference/is.na10.html | 202 +-- +| docs/reference/is.plotly.html | 134 +- +| docs/reference/normalize.html | 196 +-- +| docs/reference/percentize.html | 196 +-- +| docs/sitemap.xml | 60 + +| 37 files changed, 6008 insertions(+), 3701 deletions(-) + +* 2023-07-11(Alan O'Callaghan) Update news/desc |039dc56| +| DESCRIPTION | 2 +- +| NEWS | 4 +++- +| 2 files changed, 4 insertions(+), 2 deletions(-) + +* 2023-07-11(cole-johanson) Adds height/width arguments to plotly methods (#282) |b7d9b66| +| R/heatmaply.R | 36 ++++++++++++++++++++++++------------ +| R/plots.R | 9 +++++++-- +| 2 files changed, 31 insertions(+), 14 deletions(-) + +* 2023-07-11(Alan O'Callaghan) Bugfix in scaling fun |a808467| +| NEWS | 2 +- +| R/heatmapr.R | 2 +- +| R/plots.R | 2 +- +| 3 files changed, 3 insertions(+), 3 deletions(-) + +* 2023-07-11(Alan O'Callaghan) #292 |c94b17f| +| DESCRIPTION | 4 ++-- +| NEWS | 6 ++++++ +| R/heatmapr.R | 15 +++++++++++---- +| 3 files changed, 19 insertions(+), 6 deletions(-) + +* 2023-07-11(Alan O'Callaghan) Revert "#292" |b5295ba| +| DESCRIPTION | 4 ++-- +| NEWS | 15 --------------- +| R/heatmapr.R | 15 ++++----------- +| R/plots.R | 46 +++++----------------------------------------- +| 4 files changed, 11 insertions(+), 69 deletions(-) + +* 2023-07-11(Alan O'Callaghan) Doc |7142a74| +| DESCRIPTION | 2 +- +| man/heatmaply.Rd | 3 +-- +| man/heatmapr.Rd | 3 +-- +| 3 files changed, 3 insertions(+), 5 deletions(-) + +* 2023-07-11(Alan O'Callaghan) Merge branch 'master' of github.com:talgalili/heatmaply |d26488b +|\ +| * 2023-03-22(Alan O'Callaghan) Use local heatmaply for pkgdown |c44dde0| | +| | .github/workflows/pkgdown.yaml | 2 +- +| | 1 file changed, 1 insertion(+), 1 deletion(-) + +| * 2023-03-22(Alan O'Callaghan) Spec R deps for pkgdown |df73096| | +| | .github/workflows/pkgdown.yaml | 2 +- +| | 1 file changed, 1 insertion(+), 1 deletion(-) + +| * 2023-03-22(Alan O'Callaghan) Bump another version |c5ef909| | +| | .github/workflows/pkgdown.yaml | 2 +- +| | 1 file changed, 1 insertion(+), 1 deletion(-) + +| * 2023-03-22(Alan O'Callaghan) Bump GHA versions |1d8713a| | +| | .github/workflows/check-release.yaml | 6 +++--- +| | .github/workflows/check-standard.yaml | 8 ++++---- +| | .github/workflows/lint.yaml | 4 ++-- +| | .github/workflows/pkgdown.yaml | 4 ++-- +| | .github/workflows/test-coverage.yaml | 4 ++-- +| | 5 files changed, 13 insertions(+), 13 deletions(-) + +| * 2023-03-22(Alan O'Callaghan) Merge branch 'master' of github.com:talgalili/heatmaply |95f9ac4 +| |\ +| * | 2023-03-22(Alan O'Callaghan) Fix behaviour when limits don't contain the data range |b8e1219| | | +| | | DESCRIPTION | 4 ++-- +| | | NEWS | 8 ++++++++ +| | | R/heatmaply.R | 39 +++++++++++++++++++++------------------ +| | | R/plots.R | 34 +++++++++++++--------------------- +| | | 4 files changed, 44 insertions(+), 41 deletions(-) + +* | | 2023-07-11(Alan O'Callaghan) #292 |17dfbac +| |/ +|/| | | +| | DESCRIPTION | 4 ++-- +| | NEWS | 6 ++++++ +| | R/heatmapr.R | 15 +++++++++++---- +| | 3 files changed, 19 insertions(+), 6 deletions(-) + +* | 2023-01-06(Alan O'Callaghan) Correct date |73bfa04| | +| | DESCRIPTION | 2 +- +| | NEWS | 2 +- +| | 2 files changed, 2 insertions(+), 2 deletions(-) + +* | 2023-01-06(Alan O'Callaghan) Resolve issue flagged in #266 |f663ea6 +|/ | +| DESCRIPTION | 4 ++-- +| NEWS | 7 ++++++- +| R/plots.R | 5 ++--- +| 3 files changed, 10 insertions(+), 6 deletions(-) + +* 2022-11-12(Tal Galili) add props |a978eb6| +| NEWS | 2 +- +| 1 file changed, 1 insertion(+), 1 deletion(-) + +* 2022-11-12(Tal Galili) Fix "keep annotation names without adding dots" issue #281 |133d2df| +| DESCRIPTION | 4 ++-- +| NEWS | 8 ++++++++ +| R/heatmaply.R | 4 ++-- +| 3 files changed, 12 insertions(+), 4 deletions(-) + +* 2022-10-08(Tal Galili) trying another url that CRAN might like. |4a6b920| +| vignettes/heatmaply.Rmd | 2 +- +| 1 file changed, 1 insertion(+), 1 deletion(-) + +* 2022-10-08(Tal Galili) simplify github action using the latest usethis package (2.1.6) |8015d41| +| .github/workflows/R-CMD-check.yaml | 111 +++++++---------------------------- +| .github/workflows/pr-commands.yaml | 28 +++++---- +| 2 files changed, 38 insertions(+), 101 deletions(-) + +* 2022-10-08(Tal Galili) Fix for CRAN release: 1. bad url 2. unneeded text in NEWS |bb80cd7| +| NEWS | 56 ----------------------------------------------- +| NEWS.md | 56 ----------------------------------------------- +| README.md | 2 +- +| vignettes/heatmaply.Rmd | 2 +- +| 4 files changed, 2 insertions(+), 114 deletions(-) + +* 2022-10-08(Tal Galili) attempt to fix missing curl package for windows run |bf1015d| +| .github/workflows/R-CMD-check.yaml | 1 + +| 1 file changed, 1 insertion(+) + +* 2022-10-08(Tal Galili) update homepage re-roder banners in README |d888d8d| +| README.md | 8 ++++---- +| docs/index.html | 6 +++--- +| 2 files changed, 7 insertions(+), 7 deletions(-) + +* 2022-10-08(Tal Galili) Update README.md (and misc .Rd updates) |260c186| +| README.md | 10 ++--- +| man/RColorBrewer_colors.Rd | 19 +++++---- +| man/heatmaply.Rd | 98 ++++++++++++++++++++++++++------------------ +| man/heatmapr.Rd | 4 +- +| man/is.na10.Rd | 19 +++++---- +| man/normalize.Rd | 3 +- +| man/percentize.Rd | 3 +- +| 7 files changed, 89 insertions(+), 67 deletions(-) + +* 2022-10-08(Tal Galili) Add details to the new bug fix. |7f10968| +| NEWS | 8 +++++++- +| NEWS.md | 8 +++++++- +| 2 files changed, 14 insertions(+), 2 deletions(-) + +* 2022-10-08(Tal Galili) Refresh DESCRIPTION and NEWS docs before release |5d2fad4| +| ChangeLog | 160 +++++++++++++++++++++++++++++++ +| DESCRIPTION | 4 +- +| NEWS | 12 +-- +| NEWS.md | 13 ++- +| docs/404.html | 117 +++++++---------------- +| docs/CONDUCT.html | 109 ++++----------------- +| docs/authors.html | 164 ++++++++++---------------------- +| docs/index.html | 265 ++++++++++++++++++++++++++-------------------------- +| 8 files changed, 416 insertions(+), 428 deletions(-) + * 2022-10-08(Tal Galili) Merge pull request #279 from talgalili/cellnote-hoverinfo |8d5dc75 |\ | * 2022-10-03(Alan O'Callaghan) Add k_col/row tests |fcc35c7| | diff --git a/DESCRIPTION b/DESCRIPTION index 80d6a23..62c1aa0 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,8 +1,8 @@ Package: heatmaply Type: Package Title: Interactive Cluster Heat Maps Using 'plotly' and 'ggplot2' -Version: 1.4.3 -Date: 2023-09-07 +Version: 1.5.0 +Date: 2023-10-06 Authors@R: c( person("Tal", "Galili", role = c("aut", "cre", "cph"), email = "tal.galili@gmail.com", comment = "https://www.r-statistics.com"), person("Alan", "O'Callaghan", comment = "https://github.com/Alanocallaghan",role = "aut"), diff --git a/NEWS b/NEWS index 3ce3f91..982d907 100644 --- a/NEWS +++ b/NEWS @@ -1,11 +1,12 @@ -heatmaply 1.4.3 (2023-07-11) +heatmaply 1.5.0 (2023-10-06) =============== +## NEW FEATURE +- heatmaply: Add `plotly_source` argument for handling multiple heatmaply instances in a shiny page (see #295) +- heatmaply: add `width` and `height` arguments to the plotly method, it now control the size of the output plots, to some extent at least. ## OTHER NOTES - -- `width` and `height` arguments now control the size of the output plots, to some extent at least. - Improved error message when using `scale` argument with zero variance rows/columns. -- Add `plotly_source` argument for handling multiple heatmaply instances in a shiny page (see #295) +- Fix misc CRAN notes. heatmaply 1.4.2 (2023-01-06) =============== diff --git a/NEWS.md b/NEWS.md index ae144e1..982d907 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,3 +1,26 @@ +heatmaply 1.5.0 (2023-10-06) +=============== +## NEW FEATURE +- heatmaply: Add `plotly_source` argument for handling multiple heatmaply instances in a shiny page (see #295) +- heatmaply: add `width` and `height` arguments to the plotly method, it now control the size of the output plots, to some extent at least. + +## OTHER NOTES +- Improved error message when using `scale` argument with zero variance rows/columns. +- Fix misc CRAN notes. + +heatmaply 1.4.2 (2023-01-06) +=============== + +## BUGFIX +- Fix transpose issue when using scatter mode with `plot_method="plotly"`. + + +heatmaply 1.4.1 (2022-11-12) +=============== + +## BUGFIX +- Fix "keep annotation names without adding dots" issue #281. Props to @colejohanson. + heatmaply 1.4.0 (2022-10-08) =============== ## OTHER NOTES