From 923e1b399e4bc794795104e6a322bfd5fe72312e Mon Sep 17 00:00:00 2001 From: Lukas Heumos Date: Mon, 18 Dec 2023 15:39:38 +0100 Subject: [PATCH] Simplify further (#628) * Removed unused dependencies Signed-off-by: zethson * Tutorials update Signed-off-by: zethson * Readd fhiry Signed-off-by: zethson * Skip jupyter_core Signed-off-by: zethson * Fix import Signed-off-by: zethson * Don't fail session-info Signed-off-by: zethson * Revert session info change Signed-off-by: zethson * Refactoring Signed-off-by: zethson * Session info Signed-off-by: zethson * Docs Signed-off-by: zethson * Docs Signed-off-by: zethson --------- Signed-off-by: zethson --- docs/tutorials/notebooks | 2 +- ehrapy/io/_write.py | 4 ++-- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/docs/tutorials/notebooks b/docs/tutorials/notebooks index 5560f808..421c485c 160000 --- a/docs/tutorials/notebooks +++ b/docs/tutorials/notebooks @@ -1 +1 @@ -Subproject commit 5560f8088a33fa5519b97b1bfd4c96616cf1fc75 +Subproject commit 421c485c3983016cd849ed889912b1c7c26acb9c diff --git a/ehrapy/io/_write.py b/ehrapy/io/_write.py index b4d8ba04..2726d2e3 100644 --- a/ehrapy/io/_write.py +++ b/ehrapy/io/_write.py @@ -30,8 +30,8 @@ def write( Args: filename: File name or path to write the file to adata: Annotated data matrix. - extension: File extension. One of h5ad, csv - compression: Optional file compression. One of gzip, lzf + extension: File extension. One of 'h5ad', 'csv'. Defaults to None which infers the extension from the filename. + compression: Optional file compression. One of 'gzip', 'lzf'. Defaults to 'gzip' compression_opts: See http://docs.h5py.org/en/latest/high/dataset.html. Examples: