diff --git a/_data/single-cell-transformers.yml b/_data/single-cell-transformers.yml index b5816e3..f83016d 100644 --- a/_data/single-cell-transformers.yml +++ b/_data/single-cell-transformers.yml @@ -1,3 +1,19 @@ +- model: scCello + paper: + type: peer_reviewed + text: '[Yuan, Xinyu, et al. 2024]'(https://openreview.net/pdf?id=aeYNVtTo7o) + url: https://openreview.net/pdf?id=aeYNVtTo7o + code: + type: reproducible + text: "[ð\x9F\x9B\_ï¸\x8FGithub](https://github.com/DeepGraphLearning/scCello)" + url: https://github.com/DeepGraphLearning/scCello + omic_modalities: scRNA-seq + pre_training_dataset: 23M / cross-tissue, human ([CELLxGENE](https://cellxgene.cziscience.com/)) + input_embedding: 'Ordering: rank-based' + architecture: Encoder + ssl_tasks: 'Multi-level pre-training: MLM with CE loss for gene level modeling; an ontologybased cell-type coherence loss for intra-cellular level modeling; a relational alignment loss to inject cell-type lineage from cell ontology graph for inter-cellular level modeling' + supervised_tasks: 'fine-tuning tasks: cell type classification; zero-shot tasks: cell type annotation, marker gene prediction, novel cell type prediction, cancer drug prediction' + - model: scGREAT paper: type: peer_reviewed