From e383b0475d9ba188edf5c5ee4bf88d521918abf6 Mon Sep 17 00:00:00 2001 From: YoelShoshan Date: Fri, 14 Feb 2025 03:31:52 +0200 Subject: [PATCH] adding MAMMAL details (#86) * adding MAMMAL details * keeping the change only in the _data part * ... * adding - on empty fields --------- Co-authored-by: yoels --- _data/single-cell-transformers.yml | 17 +++++++++++++++++ 1 file changed, 17 insertions(+) diff --git a/_data/single-cell-transformers.yml b/_data/single-cell-transformers.yml index 6cfa862..ed5de35 100644 --- a/_data/single-cell-transformers.yml +++ b/_data/single-cell-transformers.yml @@ -84,6 +84,23 @@ ssl_tasks: '-' supervised_tasks: '-' + +- model: MAMMAL + paper: + type: preprint + text: '[Shoshan et al. 2024](https://arxiv.org/abs/2410.22367)' + url: https://arxiv.org/abs/2410.22367 + code: + type: reproducible + text: "[ð\x9F\x9B\_ï¸\x8FGitHub](https://github.com/BiomedSciAI/biomed-multi-alignment)" + url: https://github.com/BiomedSciAI/biomed-multi-alignment + omic_modalities: bulk/scRNA-seq, amino acid sequences, SMILES molecule sequences + pre_training_dataset: CellXGene Human + input_embedding: '-' + architecture: T5 Encoder-Decoder + ssl_tasks: Expression-ranked gene masking (CELLxGENE Human), Protein LM (Uniref90), Antibody LM (OAS), Antibody Denoising (OAS), Small-Molecule LM (ZINC), Protein Interaction LM (STRING) + supervised_tasks: Cell type annotation (zheng68k), Cancer drug response prediction (GDSC1/2/3), Brain Blood Barrier Penetration prediction (MoleculeNet), Small-Molecule toxicity prediction (MoleculeNet), drug clinical trial result prediction (MoleculeNet), Antibody-Antigen binding prediction (HER2), Targeted antibody generation (SAbDAb), Protein-Protein delta-delta G prediction (SKEMPI v2), Drug-Target interaction prediction (PEER), TCR binding prediction (Weber et al) + - model: Nicheformer paper: type: peer_reviewed