MxlPy-tim/mkdocs.yml at main · tnies/MxlPy-tim · GitHub

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site_name: mxlpy docs
site_url: https://computational-biology-aachen.github.io/mxlpy/
site_dir: dist
repo_url: https://github.com/Computational-Biology-Aachen/MxlPy
use_directory_urls: false

nav:
  - About: index.md
  - ODE features:
      - Basics: basics.ipynb
      - Scans: scans.ipynb
      - MCA: mca.ipynb
      - Fitting: fitting.ipynb
      - Monte Carlo methods: monte-carlo.ipynb
      - Label models: label-models.ipynb
      - Model parameterisation: parameterise.ipynb
      - Stability analysis: stability.ipynb
      - Identifiability: parameter_identifiability.ipynb
      - Symbolic: symbolic.ipynb
      - Integrator configuration: integrators.ipynb
  - Mechanistic learning: mxl.ipynb
  - Metaprogramming: metaprogramming.ipynb
  - Examples: examples.ipynb
  - Reporting: report.ipynb
  - Tips: tips.ipynb
  - How to cite: citing.md

theme:
  name: material
  features:
    - content.code.copy
    - content.code.annotate
    - search.suggest
    - search.highlight
    - search.share
    - navigation.instant
    - navigation.instant.prefetch
  palette:
    - media: "(prefers-color-scheme: light)"
      scheme: default
      toggle:
        icon: material/toggle-switch-off-outline
        name: Switch to dark mode
      primary: teal
    - media: "(prefers-color-scheme: dark)"
      scheme: slate
      toggle:
        icon: material/toggle-switch
        name: Switch to light mode
      primary: teal

extra:
  version:
    provider: mike
    default: stable

markdown_extensions:
  - admonition
  - attr_list
  - pymdownx.highlight:
      anchor_linenums: true
  - pymdownx.superfences
  - pymdownx.snippets:
      check_paths: true
  - pymdownx.tabbed
  - toc:
      permalink: true

plugins:
  - search
  - mkdocs-jupyter:
      ignore_h1_titles: True
      execute: true
      ignore: ["assets/*.ipynb"]
      include_requirejs: true
      custom_mathjax_url: "https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=TeX-AMS_CHTML-full,Safe"

extra_css:
  - stylesheets/extra.css