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Julia's Pkg currently does not work in CI workflow #152

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benegee opened this issue Dec 11, 2023 · 0 comments · Fixed by #216
Closed

Julia's Pkg currently does not work in CI workflow #152

benegee opened this issue Dec 11, 2023 · 0 comments · Fixed by #216

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@benegee
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benegee commented Dec 11, 2023

#150 revealed an issue in the CI workflow.

When libtrixi-init-julia is invoked we get:

Install dependencies for configuration...
  Installing known registries into `~/.julia`
julia: symbol lookup error: /opt/hostedtoolcache/julia/1.9.4/x64/bin/../lib/julia/libcurl.so: undefined symbol: nghttp2_option_set_no_rfc9113_leading_and_trailing_ws_validation
  • This occurs as soon as the Pkg package is used (instantiate, status, update, ...).

  • It does not occur when LD_PRELOAD is emptied before. (But then we get the usual HDF5 error.)

  • Since the last time the CI ran successfully, most notably julia was updated to version 1.9.4.

  • Along with this, the bundled libcurl went from 4.7.0 to 4.8.0.

  • The github runner has version 4.7.0 locally installed, which we load via LD_PRELOAD: /lib/x86_64-linux-gnu/libcurl.so.4.

  • The new bundled libcurl version has several more nghttp2_* symbols.

  • When Pkg does something, Julia loads the bundled libcurl.so using dlopen. This happens independent of any previously loaded libcurl.

  • At this point both libcurl.so seem to be loaded

    julia> Libdl.dllist()
    74-element Vector{String}:
    "linux-vdso.so.1"
    "/usr/lib/x86_64-linux-gnu/libcurl.so"
    "/lib/x86_64-linux-gnu/libnghttp2.so.14"
    [...]
    "/mnt/ssd/home/bgeihe/julia-1.9.4/bin/../lib/julia/libcurl.so"
    
  • The bundled libcurl contains nghttp2_* symbols which are not provided by the system libnghttp2

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