Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

ERROR: Could not build wheels for velocyto, which is required to install pyproject.toml-based projects #449

Open
Deroline opened this issue Apr 30, 2023 · 1 comment
Labels

Comments

@Deroline
Copy link

× python setup.py bdist_wheel did not run successfully.
│ exit code: 1
╰─> [43 lines of output]
['/private/var/folders/fl/b2bz90qj3g5gvl83n8n2vpvr0000gn/T/pip-install-wlbeuffp/velocyto_5ef48d94f2d94a81a2432272c2670d6d/setup.py', 'bdist_wheel', '-d', '/private/var/folders/fl/b2bz90qj3g5gvl83n8n2vpvr0000gn/T/pip-wheel-l3nb9o_l']
running bdist_wheel
running build
running build_py
creating build
creating build/lib.macosx-10.9-x86_64-cpython-310
creating build/lib.macosx-10.9-x86_64-cpython-310/velocyto
copying velocyto/transcript_model.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto
copying velocyto/diffusion.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto
copying velocyto/metadata.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto
copying velocyto/analysis.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto
copying velocyto/molitem.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto
copying velocyto/_version.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto
copying velocyto/neighbors.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto
copying velocyto/constants.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto
copying velocyto/estimation.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto
copying velocyto/init.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto
copying velocyto/feature.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto
copying velocyto/logic.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto
copying velocyto/indexes.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto
copying velocyto/utils.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto
copying velocyto/gene_info.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto
copying velocyto/r_interface.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto
copying velocyto/segment_match.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto
copying velocyto/counter.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto
copying velocyto/serialization.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto
copying velocyto/read.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto
creating build/lib.macosx-10.9-x86_64-cpython-310/velocyto/commands
copying velocyto/commands/velocyto.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto/commands
copying velocyto/commands/run.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto/commands
copying velocyto/commands/init.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto/commands
copying velocyto/commands/run_smartseq2.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto/commands
copying velocyto/commands/dropest_bc_correct.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto/commands
copying velocyto/commands/run_dropest.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto/commands
copying velocyto/commands/run10x.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto/commands
copying velocyto/commands/_run.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto/commands
running build_ext
building 'velocyto.speedboosted' extension
creating build/temp.macosx-10.9-x86_64-cpython-310
creating build/temp.macosx-10.9-x86_64-cpython-310/velocyto
clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/dairui/anaconda3/include -fPIC -O2 -isystem /Users/dairui/anaconda3/include -I/Users/dairui/anaconda3/lib/python3.10/site-packages/numpy/core/include -I/Users/dairui/anaconda3/include/python3.10 -c velocyto/speedboosted.c -o build/temp.macosx-10.9-x86_64-cpython-310/velocyto/speedboosted.o -fopenmp -ffast-math
clang: error: unsupported option '-fopenmp'
error: command '/usr/bin/clang' failed with exit code 1
[end of output]

note: This error originates from a subprocess, and is likely not a problem with pip.
ERROR: Failed building wheel for velocyto
Running setup.py clean for velocyto
Failed to build velocyto
ERROR: Could not build wheels for velocyto, which is required to install pyproject.toml-based projects

@Deroline Deroline added the bug label Apr 30, 2023
@livyring
Copy link

livyring commented May 8, 2024

Has anyone found a solution to this? I am still running into this bug trying to install velocyto

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
Projects
None yet
Development

No branches or pull requests

2 participants