From bcd9447c8fb8fa355eea0c881ace1a461d4d07bd Mon Sep 17 00:00:00 2001 From: Kiarod Pashminehazar Date: Wed, 24 Jan 2024 15:03:17 -0800 Subject: [PATCH] update samtools to 1.19.2 --- CHANGELOG.md | 4 ++++ Dockerfile | 2 +- README.md | 2 +- metadata.yaml | 2 +- 4 files changed, 7 insertions(+), 3 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 317a5fc..5bc0aa6 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -10,6 +10,10 @@ This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.htm ## [Unreleased] --- +## [1.19.2] 2024-01-24 +### Changed +- Update SAMTools version to 1.19.2 + ## [1.18] 2023-10-17 ### Changed - Update SAMTools version to 1.18 diff --git a/Dockerfile b/Dockerfile index 4e25d7b..9d03637 100644 --- a/Dockerfile +++ b/Dockerfile @@ -3,7 +3,7 @@ ARG MINIFORGE_VERSION=22.9.0-2 FROM condaforge/mambaforge:${MINIFORGE_VERSION} AS builder # Use mamba to install tools and dependencies into /usr/local -ARG SAMTOOLS_VERSION=1.18 +ARG SAMTOOLS_VERSION=1.19.2 RUN mamba create -qy -p /usr/local \ -c bioconda \ -c conda-forge \ diff --git a/README.md b/README.md index 11875c9..c3cf277 100644 --- a/README.md +++ b/README.md @@ -9,7 +9,7 @@ SAMtools documentation [here](http://www.htslib.org/doc/samtools.html). # Version | Tool | Version | |------|---------| -|SAMtools| 1.18 | +|SAMtools| 1.19.2 | --- diff --git a/metadata.yaml b/metadata.yaml index 63c707c..10a36b3 100644 --- a/metadata.yaml +++ b/metadata.yaml @@ -5,7 +5,7 @@ maintainers: ['rhughwhite@mednet.ucla.edu'] contributors: ['Rupert Hugh-White', 'Helena Winata', 'Arpi Beshlikyan', 'Jaron Arbet', 'Sorel Fitz-Gibbon', 'Beth Neilsen', 'Kiarod Pashminehazar'] languages: ['Dockerfile'] tools: ['SAMtools'] -version: ['1.18'] +version: ['1.19.2'] purpose: 'A tool for reading/writing/editing/indexing/viewing SAM/BAM/CRAM format' references: 'Li H et al. Bioinformatics 25, (2009)' image_name: 'samtools'