.gitignore

#####################################
#### IGNORE COMPILED STAN MODELS ####
#####################################
# ignore *everything*
*
!/**/
# and then this 'unignores' anything with an extensio
# (stan models do not have an extension on linux)
!*.*
# this has to go at the top of the script, otherwise it overides other commands


##### Custom team ones
# outputs
data/
results/
output/
outputs/
# exlude specific file types containing data
*.csv
*.gz
*.tsv
*.secrets
*.png
*.pdf
*.log
*.out
*.txt
*.ods
*.rds
*.html

###################
# Python
###################
__pycache__/
.ipynb_checkpoints
*/.ipynb_checkpoints/*


# History files
.Rhistory
.Rapp.history

# Session Data files
.RData
.RDataTmp

# User-specific files
.Ruserdata

# Example code in package build process
*-Ex.R

# Output files from R CMD build
/*.tar.gz

# Output files from R CMD check
/*.Rcheck/

# RStudio files
.Rproj.user/

# produced vignettes
vignettes/*.html
vignettes/*.pdf

# OAuth2 token, see https://github.com/hadley/httr/releases/tag/v0.3
.httr-oauth

# knitr and R markdown default cache directories
*_cache/
/cache/

# Temporary files created by R markdown
*.utf8.md
*.knit.md

# R Environment Variables
.Renviron

# pkgdown site
docs/

# translation temp files
po/*~

# RStudio Connect folder
rsconnect/

##########

# ignore certain rules for static docsite
!docsite/docs/
# (we happen to have a module called "outputs"!!)
!docsite/docs/outputs/
!docsite/site/**/*.html