You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
I am encountering an issue while running hivtrace with the following command:
hivtrace -i /home/mj/input.fas -a resolve -r HXB2_prrt -t .015 -m 500 -g .015 --log /home/mj/hivtrace.log
The error traceback I'm getting is:
Traceback (most recent call last):
File "/home/mj/.local/bin/hivtrace", line 8, in
sys.exit(main())
File "/home/mj/.local/lib/python3.8/site-packages/hivtrace/hivtrace.py", line 793, in main
results = hivtrace(
File "/home/mj/.local/lib/python3.8/site-packages/hivtrace/hivtrace.py", line 523, in hivtrace
subprocess.check_call(tn93_process, stdout=tn93_fh, stderr=tn93_fh)
File "/usr/lib/python3.8/subprocess.py", line 364, in check_call
raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command '['tn93', '-q', '-0', '-o', '/tmp/hivtrace-ogsh8pkl/2018-2020MSM_0413.fas_user.tn93output.csv', '-t', '.015', '-a', 'resolve', '-l', '500', '-g', '.015', '-f', 'csv', '/home/mj/2018-2020MSM_0413.fas_output.fasta']' returned non-zero exit status 1.
Could you please help me understand what might be causing this issue? Here are some additional details:
Operating system: Ubuntu 20.04 LTS
Python version: 3.11.9
gcc (Ubuntu 9.4.0-1ubuntu1~20.04.2) version: 9.4.0
tn93 version: 1.0.14
The text was updated successfully, but these errors were encountered:
Hi Steven,
I am encountering an issue while running hivtrace with the following command:
hivtrace -i /home/mj/input.fas -a resolve -r HXB2_prrt -t .015 -m 500 -g .015 --log /home/mj/hivtrace.log
The error traceback I'm getting is:
Traceback (most recent call last):
File "/home/mj/.local/bin/hivtrace", line 8, in
sys.exit(main())
File "/home/mj/.local/lib/python3.8/site-packages/hivtrace/hivtrace.py", line 793, in main
results = hivtrace(
File "/home/mj/.local/lib/python3.8/site-packages/hivtrace/hivtrace.py", line 523, in hivtrace
subprocess.check_call(tn93_process, stdout=tn93_fh, stderr=tn93_fh)
File "/usr/lib/python3.8/subprocess.py", line 364, in check_call
raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command '['tn93', '-q', '-0', '-o', '/tmp/hivtrace-ogsh8pkl/2018-2020MSM_0413.fas_user.tn93output.csv', '-t', '.015', '-a', 'resolve', '-l', '500', '-g', '.015', '-f', 'csv', '/home/mj/2018-2020MSM_0413.fas_output.fasta']' returned non-zero exit status 1.
Could you please help me understand what might be causing this issue? Here are some additional details:
Operating system: Ubuntu 20.04 LTS
Python version: 3.11.9
gcc (Ubuntu 9.4.0-1ubuntu1~20.04.2) version: 9.4.0
tn93 version: 1.0.14
The text was updated successfully, but these errors were encountered: