pathfinder/environment.yml at main · wallnerlab/pathfinder · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
name: pathfinder
channels:
  - bioconda
  - conda-forge
  - defaults
dependencies:
  - python=3.10
  - pip
  - setuptools
  - aria2
  - foldseek
  - tmalign
  - wheel
  - pip:
      - biopython==1.85
      - colorama==0.4.6
      - contourpy==1.3.2
      - cycler==0.12.1
      - fonttools==4.60.1
      - joblib==1.5.2
      - kiwisolver==1.4.9
      - matplotlib==3.10.6
      - networkx==3.4.2
      - numpy==2.2.6
      - packaging==25.0
      - pandas==2.3.3
      - parallelbar==2.5
      - pillow==11.3.0
      - pyparsing==3.2.5
      - python-dateutil==2.9.0.post0
      - pytz==2025.2
      - scikit-learn==1.7.2
      - scipy==1.15.3
      - six==1.17.0
      - tabulate==0.9.0
      - threadpoolctl==3.6.0
      - tqdm==4.67.1
      - tzdata==2025.2
      - dash==3.1.1
      - dash-bio==1.0.2
      - dash-bootstrap-components==2.0.4
      - dash-bootstrap-templates==2.1.0
      - dash-daq==0.6.0
      - gemmi==0.7.0