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plot.py
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"""
Script that visualizes the results of the models as box plots.
Author: Ondřej Sedláček <xsedla1o@stud.fit.vutbr.cz>
"""
import argparse
import os
import os.path
from typing import Dict, List
import matplotlib.pyplot as plt
import pandas as pd
def load_model_dfs(model_output_dir):
model_dfs = []
if not os.path.exists(model_output_dir):
print(f"Directory {model_output_dir} does not exist")
return None
if not list(n for n in os.listdir(model_output_dir) if n.startswith("metrics")):
print(f"Directory {model_output_dir} does not contain metrics files")
return None
for i in range(10):
offset = i / 10
metrics_path = f"{model_output_dir}/metrics_{offset}.csv"
if os.path.exists(metrics_path):
metrics_df = pd.read_csv(metrics_path)
model_dfs.append(metrics_df)
else:
print(f"File {metrics_path} not found")
if model_dfs:
return pd.concat(model_dfs).reset_index().drop(columns="index")
else:
return None
def plot_f1_boxplot(model_output_dir, metrics_df, model_name):
data = metrics_df[metrics_df["split"] == "test"][["f1"]]
fig, ax = plt.subplots()
ax.set_ylabel("F1-score")
ax.set_ylim(0, 1)
ax.boxplot(data, tick_labels=[model_name])
plt.savefig(f"{model_output_dir}/f1.png")
plt.close()
def plot_split_performance(model_output_dir, metrics_df):
test_data = metrics_df[metrics_df["split"] == "test"]
val_data = metrics_df[metrics_df["split"] == "val"]
train_data = metrics_df[metrics_df["split"] == "train"]
test_x, test_y = test_data["offset"], test_data["f1"]
val_x, val_y = val_data["offset"], val_data["f1"]
train_x, train_y = train_data["offset"], train_data["f1"]
fig, ax = plt.subplots()
ax.set_ylabel("F1-score")
ax.set_ylim(0, 1)
ax.plot(test_x, test_y, label="test")
ax.plot(val_x, val_y, label="val")
ax.plot(train_x, train_y, label="train")
ax.set_xticks(test_x)
ax.set_xlabel("Cross validation offset")
plt.legend()
plt.savefig(f"{model_output_dir}/split_performance.png")
plt.close()
def plot_test_split_performance(output_dir: str, models):
fig, ax = plt.subplots()
ax.set_ylabel("F1-score")
ax.set_ylim(0, 1)
for model in models:
model_df = load_model_dfs(f"{output_dir}/{model}")
if model_df is not None:
test_data = model_df[model_df["split"] == "test"]
test_x, test_y = test_data["offset"], test_data["f1"]
ax.plot(test_x, test_y, label=model)
ax.set_xlabel("Cross validation offset")
plt.legend(bbox_to_anchor=(1.05, 1), loc="upper left", borderaxespad=0.0)
plt.savefig(f"{output_dir}/test_split_performance.png", bbox_inches="tight")
plt.close()
def plot_single(
model_output_dir,
model_name,
verbose=False,
):
metrics_df = load_model_dfs(model_output_dir)
if metrics_df is None:
print(f"No data found for {model_name}")
return
data = metrics_df[metrics_df["split"] == "test"]
data.drop(columns=["split"]).to_csv(f"{model_output_dir}/test.csv", index=False)
if verbose:
print(data)
print(data.describe().drop("count"))
plot_f1_boxplot(model_output_dir, metrics_df, model_name)
plot_split_performance(model_output_dir, metrics_df)
def plot_all(output_dir, models, verbose=False):
plot_data: Dict[str, List[float]] = {}
for model in models:
model_df = load_model_dfs(f"{output_dir}/{model}")
if model_df is not None:
model_data = model_df[model_df["split"] == "test"][["f1"]]
plot_data[model] = model_data.values.flatten().tolist()
if verbose:
data = model_df[model_df["split"] == "test"]
print(model)
print(data)
print(data.describe().drop("count"))
if not plot_data:
print(f"No data found for {output_dir}")
return
fig, ax = plt.subplots(figsize=(2 + 1.1 * len(plot_data), 5))
ax.set_ylabel("F1-score")
ax.set_ylim(0, 1)
try:
ax.boxplot(plot_data.values(), tick_labels=plot_data.keys())
plt.savefig(f"{output_dir}/f1.png", bbox_inches="tight")
except ValueError as e:
print(f"Error plotting boxplot for {output_dir}: {e}")
plt.close()
# Save mean and median values to CSV
mean_data = pd.DataFrame(plot_data).mean(axis=0)
median_data = pd.DataFrame(plot_data).median(axis=0)
csv_df = pd.concat([mean_data, median_data], axis=1)
csv_df.columns = ["mean", "median"]
csv_df.to_csv(f"{output_dir}/mean_med_f1.csv", index=True)
# Plot a mean of all models per fold (cross-validation iteration)
mean_data = pd.DataFrame(plot_data).mean(axis=1)
fig, ax = plt.subplots(figsize=tuple(map(lambda x: x * 0.95, (5, 4))))
ax.set_xlabel("Fold (CV iteration)")
ax.set_ylabel("F1-score")
ax.set_ylim(0, 1)
ax.plot(mean_data.index, mean_data.values, label="Mean")
ax.set_xticks(mean_data.index)
plt.savefig(f"{output_dir}/mean_f1.pdf", bbox_inches="tight", dpi=300)
plt.close()
def recurse(output_dirs, verbose=False):
for output_dir in output_dirs:
models = [
m
for m in os.listdir(output_dir)
if os.path.isdir(os.path.join(output_dir, m))
]
plot_all(output_dir, sorted(models), verbose=verbose)
plot_test_split_performance(output_dir, sorted(models))
for model in models:
plot_single(
f"{output_dir}/{model}",
model,
verbose=verbose,
)
if __name__ == "__main__":
parser = argparse.ArgumentParser()
parser.add_argument(
"input_dirs",
nargs="+",
help="Directories with model output results, for example outputs/${DATASET_ID}/",
type=str,
)
parser.add_argument(
"--verbose",
action="store_true",
help="Enable verbose output.",
default=False,
)
args = parser.parse_args()
recurse(args.input_dirs, args.verbose)